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Detailed information on CNT30289853


BLAST search results

BLAST vs Swiss-Prot:
sp|Q01667|CAB6_ARATH, E-value = 1e-38

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695032Triticum aestivumOryza sativa41.4949.1793.52324forward
CNT30520570Triticum aestivumSetaria italica41.2332.9291.93322forward
CNT30640553Triticum aestivumNymphaea colorata33.0332.0586.05258forward
CNT30513329Triticum aestivumJuglans regia36.2444.0880.57283forward
CNT30526506Triticum aestivumPhaseolus vulgaris38.1625.1579.87298forward
CNT30485914Triticum aestivumOlea europaea34.8333.9680.15272forward
CNT30562752Triticum aestivumActinidia chinensis20.2312.4986.71158forward
CNT30243799Triticum aestivumAvena sativa43.4152.8994.1339forward
CNT30452520Triticum aestivumSaccharum spontaneum41.2321.4891.93322forward
CNT30229721Triticum aestivumAnanas comosus38.1612.6988.59298forward
CNT30219415Triticum aestivumKalanchoe fedtschenkoi26.6366.6779.81208forward
CNT3067780Triticum aestivumLeersia perrieri14.3423.4397.32112forward
CNT30680618Triticum aestivumTriticum urartu97.9579.698.95765forward
CNT30620949Triticum aestivumCajanus cajan38.1627.780.54298forward
CNT30596639Triticum aestivumOryza meridionalis34.5716.3192.22270forward
CNT30360911Triticum aestivumLactuca sativa12.4221.3283.5197forward
CNT30370757Triticum aestivumOryza glumipatula21.5135.2297.02168forward
CNT30147934Triticum aestivumBrachypodium distachyon28.6858.7993.3224forward
CNT30102551Triticum aestivumOryza rufipogon25.6121.695.5200forward
CNT30577064Triticum aestivumOryza barthii34.4435.2192.57269forward
CNT30581346Triticum aestivumEchinochloa crusgalli3747.6193.43289forward
CNT30604352Triticum aestivumOryza punctata25.2234.293.91197forward
CNT30551395Triticum aestivumOryza brachyantha41.6137.5393.23325forward

Expression of CNT30289853

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MVVCSGSLRWVAQLLRGPLPVAAACTAKPRKATMARRACLISASCRVSFFSGSAASPSGSK*

>peptide 2 (31 aa)
SSYKTKARSLHGRAFVHFAAELTEIARPPTT*

>peptide 3 (47 aa)
MYPITSTSIQISVVSVNGSGCPRFWSRESTSYCRYSAGFPRPKGSKP*

>peptide 4 (32 aa)
MRPFCGAGSASRVPRNALAAAATDEAMAARSS*

Sequence

>CNT30289853
CTCGTCATACAAAACCAAAGCACGTTCGTTACACGGACGCGCGTTCGTCCATTTTGCTGCTGAGCTGACAGAAATTGCTCGACCACCGACCACTTAAGAG
GAACCCAAGGTGTCGAAGATGGTGGTGTGCAGCGGGTCGCTGAGGTGGGTGGCCCAGTTGTTGAGAGGCCCCTTGCCGGTGGCGGCGGCCTGCACGGCGA
AGCCGAGGAAGGCGACCATGGCGAGGCGGGCGTGCTTGATCTCCGCCAGCTGCAGAGTCTCCTTCTTCTCCGGGTCCGCCGCGAGCCCCAGCGGGTCGAA
GTAGGAGCCACCGGGGTAGAGCCTCCTCTCCGGGTCCAGCTCCGCGTTGCGCTGGAACTCGATGTACCCGATCACCAGCACCTCGATCCAGATCAGCGTG
GTGAGCGTGAACGGCAGCGGCTGCCCCAGGTTCTGGTCCAGGGAGTCCACGTCGTACTGCAGGTACTCCGCGGGCTTCCCAAGGCCGAAGGGGTCGAAGC
CGTAGTCGCCGACGAGCGTCCCGTCGAGGTACTCGGGCGCCTGCGCGCCGGGGAACCACAGCGGCCGGTCGGTGGTCGGGGGCGCCTTGGCCTTCTTCGG
CGGGGCCTTCTTCTTGCCGAAGCCGAACCGCGCCACGATGCGCCCGTTCTGCGGCGCCGGGTCCGCCAGCCGGGTCCCGAGGAACGCGCTCGCCGCGGCG
GCCACCGACGAAGCCATGGCTGCTCGCTCCTCCTAGCTTGTCCTCCTCGGCCTTTGCGTGCGTTGAGGTGGCGGGTGGTGG