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Detailed information on CNT30370623


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SDM1|CB121_HORVU, E-value = 5e-18

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694831Oryza glumipatulaOryza sativa53.6954.6497.71742forward
CNT30290500Oryza glumipatulaTriticum aestivum20.9156.0192.04289forward
CNT30386996Oryza glumipatulaTriticum turgidum17.7345.2990.61245forward
CNT30554457Oryza glumipatulaOryza glaberrima87.19100.3398.341205forward
CNT30436081Oryza glumipatulaAegilops tauschii15.5642.0791.16215forward
CNT30244633Oryza glumipatulaAvena sativa20.9853.690.34290forward
CNT30453511Oryza glumipatulaSaccharum spontaneum17.9547.0692.74248forward
CNT30229777Oryza glumipatulaAnanas comosus18.0934.0684.8250forward
CNT30680853Oryza glumipatulaTriticum urartu17.844.0991.46246forward
CNT30580706Oryza glumipatulaEchinochloa crusgalli21.2746.6793.2294forward
CNT30551395Oryza glumipatulaOryza brachyantha16.1425.7595.96223forward

Expression of CNT30370623

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MQCACVHSQSHSLSQIPRSIDRCTSGCINSSSWVFLYYKSPPCKSPLTTNPALLI*

>peptide 2 (55 aa)
MLVVMYGGVSCTLPASCQVTPVSHSTERAPRVASMAQRPWMSSHSRKRWRPNTSV*

>peptide 3 (42 aa)
MTSPLSIPSQLARHHKTKPRARTHTNASIPFELRAKELKLRG*

>peptide 4 (40 aa)
MVVWSGSLRWATMARRACLISASCSRSFFSGSDANPSGSK*

>peptide 5 (38 aa)
MISPALFLARNVLAAAATDDAMAAPLLLLLLRECVGGGE

>peptide 6 (29 aa)
MTSTSIQISVEIENGSGCPRYDDPSTSST*

>peptide 7 (37 aa)
MQVAINHQPSSPNLSSNQQKDDLSSLHTLPARSSSQN*

Sequence

>CNT30370623
TTATTTATAACTAATTATTTTTTTCAGTGATAAACAATATACCTATTGATAGCGAGACACCTGTTATAACTTTGTTAATATCAATACAAGTCAGGTAAAG
TGTATGCAGTGTGCATGTGTGCATTCACAGTCACACTCACTTAGTCAAATACCAAGATCGATCGATCGATGTACAAGTGGATGCATTAATTCATCATCTT
GGGTGTTCTTATATTACAAATCACCACCATGCAAGTCGCCATTAACCACCAACCCAGCTCTCCTAATTTAAGTAGTAATCAACAAAAGGATGACCTCTCC
TCTCTCCATACCCTCCCAGCTCGCTCGTCATCACAAAACTAAACCGCGCGCGCGAACGCACACCAACGCATCGATCCCGTTTGAATTGCGCGCGAAAGAG
CTTAAATTAAGAGGATGAGGAGAAGGTGTCGAAGATGGTGGTGTGGAGCGGGTCGCTGAGGTGGGCGACCATGGCGAGGCGGGCGTGCTTGATCTCCGCC
AGCTGCAGCCGCTCCTTCTTCTCCGGGTCCGACGCCAACCCGAGCGGGTCGAAGTAGGACCCCCCCGGGTACAGCCTCTTCTCCGGGTCCAGCTCCGCGT
TGCGCTGGAACTCGATGTAGCCGATGACGAGCACCTCGATCCAGATCAGCGTCGAGATCGAGAACGGCAGCGGCTGCCCCAGGTACGACGACCCATCCAC
CAGCTCCACCTGAAAAACACCATCGGACCATTCCTACGTCAGTGTCATCGTCCTCGTCTGCGGCGCCGGCGACACGTAGTAACCAGGGTTTTAAATCTTC
AGCTATAGCTATTTGAAAAAAGGTGTAGCAATTTGTTCTCATGTATAATTTAGTCATAGCTGCCACTATTTTGAGAGGCTAAACGCTAAATGTTTTAGCC
CGCTAGCTATTTGAAACAATGGTAGTGAGAAACGCCCAGAGGTTTTTCGGCTATCCCCACAGGCTAGACGACCTGAGTTTGAAGCCTTACTCTTTCTAAT
TATTTGATATATTAGGTCATTTTTTAATATTTGCTTTTTTTAAAAAAAAATGCTGGTAGTAATGTATGGGGGAGTATCGTGTACCTTGCCGGCGTCTTGC
CAGGTGACGCCGGTGAGCCACTCGACGGAGAGGGCGCCGAGGGTGGCGAGCATGGCCCAGCGGCCGTGGATGAGCTCGCACTCGCGGAAGCGCTGGAGGC
CGAACACCTCGGTGTAGGGCTGGAACGGGGTGGACTTCACCTCGCCGGTCTCGAACCGGGTGCCGATGATCTCGCCGGCGTTGTTCTTGGCCAGGAACGT
GCTCGCCGCCGCTGCCACCGACGACGCCATGGCTGCTCCTCTCCTTCTTCTCCTTCTTCGAGAATGTGTGGGTGGTGGTGAG