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Detailed information on CNT30221568


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XF88|CB4B_ARATH, E-value = 2e-102

BLAST vs NONCODE:
NONBRAT002959, E-value = 9e-13

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695194Hordeum vulgareOryza sativa30.6634.787.23321forward
CNT30672010Hordeum vulgareSetaria viridis29.0451.6188.49304forward
CNT30520322Hordeum vulgareSetaria italica33.9131.6189.3355forward
CNT30640553Hordeum vulgareNymphaea colorata18.8224.4787.82197forward
CNT30708158Hordeum vulgareGlycine max25.2131.8584.85264forward
CNT30179479Hordeum vulgareSecale cereale25.1238.0194.3263forward
CNT30290078Hordeum vulgareTriticum aestivum27.9838.3597.61293forward
CNT30236263Hordeum vulgareBrassica oleracea1532.381.53157forward
CNT30554457Hordeum vulgareOryza glaberrima23.7820.7384.34249forward
CNT30244040Hordeum vulgareAvena sativa28.8439.0796.69302forward
CNT30659938Hordeum vulgareTriticum dicoccoides47.4792.7291.55497forward
CNT30452520Hordeum vulgareSaccharum spontaneum33.8123.6289.55354forward
CNT30132672Hordeum vulgareLolium perenne31.959.8694.31334forward
CNT3042238Hordeum vulgareChlamydomonas reinhardtii6.7822.4787.3271forward
CNT30229721Hordeum vulgareAnanas comosus33.7215.0385.84353forward
CNT30219415Hordeum vulgareKalanchoe fedtschenkoi14.2347.7683.89149forward
CNT30680853Hordeum vulgareTriticum urartu53.68100.7291.46562forward
CNT30340460Hordeum vulgareEragrostis tef33.2440.9488.79348forward
CNT30596509Hordeum vulgareOryza meridionalis23.5916.2590.28247forward
CNT30370789Hordeum vulgareOryza glumipatula28.8421.9591.39302forward
CNT30328621Hordeum vulgareAsparagus officinalis13.1846.3188.41138forward
CNT30120621Hordeum vulgareCitrus clementina8.2122.1184.8886forward
CNT30148661Hordeum vulgareBrachypodium distachyon20.8246.7890.37218forward
CNT30102749Hordeum vulgareOryza rufipogon21.0131.782.27220forward
CNT30577064Hordeum vulgareOryza barthii24.9334.1685.44261forward
CNT30581456Hordeum vulgareEchinochloa crusgalli30.5655.6588.75320forward
CNT30116923Hordeum vulgareOryza nivara28.0835.3489.8294forward
CNT30551395Hordeum vulgareOryza brachyantha26.4631.9985.92277forward

Expression of CNT30221568

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MISPARFCARFWSRESTSYCRYSAGFPRPKGSKP*

>peptide 2 (50 aa)
MTREDVTLPASCQVTPVSHSTVRAPRVASMAQRPWMSSHSRNLWRPNTSA*

>peptide 3 (36 aa)
RKKQTKNQLKIDVQVDALSHHWFIFYKSPSPSSSPM*

>peptide 4 (83 aa)
MVLLSGPLPVAAACTAKPRKATMARRACLISASCRVSFFSGSAASPSGSNLLSGSSSALRWNSMYPITSTSIQMSVVIVNGSG*

Sequence

>CNT30221568
CGCAAAAAACAAACAAAAAATCAGCTCAAGATTGATGTACAAGTGGATGCATTGAGTCACCATTGGTTCATATTTTACAAATCACCAAGTCCCAGCAGCT
CTCCTATGTGATCGGACCAGCATTATAATCAACAAAGGATCTTTGCGATACCCTCTCATCCATCACTCGTCATACAAAACCAAAGCACGTTCGTTACACG
GACGCGCGTTCGTCCATTTTGCAGCTGAGCTGACAGAAACTGCTCGACCACCGACCACTTAAGAGGAGCCGAAGGTGTCGAAGATGGTGTTGTTGAGCGG
ACCCTTGCCGGTGGCGGCGGCCTGCACGGCGAAGCCGAGGAAGGCGACCATGGCGAGGCGGGCGTGCTTGATCTCCGCCAGCTGCAGAGTCTCCTTCTTC
TCCGGGTCCGCCGCGAGTCCCAGCGGGTCGAACCTCCTCTCCGGGTCCAGCTCCGCGTTGCGCTGGAACTCGATGTACCCGATCACCAGCACCTCGATCC
AGATGAGCGTGGTGATCGTGAACGGCAGCGGCTGACCCAGGTACGACGACCCGTCCACCAGCTCCACCTGCCAACATCGTCGACGTACGCCATACACAGA
TCAGTCGTCGTACTCCAGATTCACGTGCCTGCTAACTATCTACTCATATCGCCAATGAATCACATATGACTAGAGAGGACGTTACCTTGCCGGCGTCCTG
CCAGGTGACGCCAGTGAGCCACTCGACGGTGAGGGCGCCGAGGGTGGCGAGCATGGCCCAGCGGCCGTGGATGAGCTCGCACTCGCGGAACCTCTGGAGG
CCGAACACCTCCGCGTAGGGCTGGAACGGGGTGGACTTGACGTCGGCGTCCTCGAACCGGGTGCCGATGATCTCACCCGCCAGGTTCTGTGCAAGGTTCT
GGTCCAGGGAGTCCACGTCGTACTGCAGGTACTCCGCGGGCTTCCCGAGGCCGAAGGGGTCGAAGCCGTAGTCGCCGACGAGCGTGCCGTCGAGGTACTC
GGGCGCCTGCGCGCCGGGGAACCACAGCGGCCGGTCGAGTACCTGCA