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Detailed information on CNT30229721


BLAST search results

BLAST vs Swiss-Prot:
sp|Q07473|CB4A_ARATH, E-value = 3e-72

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695032Ananas comosusOryza sativa12.4844.4688.4293forward
CNT30672010Ananas comosusSetaria viridis12.2748.988.54288forward
CNT30520322Ananas comosusSetaria italica15.0331.4387.82353forward
CNT30640553Ananas comosusNymphaea colorata8.9926.2189.1211forward
CNT30513329Ananas comosusJuglans regia11.843.1584.48277forward
CNT30500595Ananas comosusCoffea canephora7.3322.680.81172forward
CNT30276136Ananas comosusChenopodium quinoa7.6234.7679.89179forward
CNT30401900Ananas comosusBeta vulgaris13.0731.3979.15307forward
CNT30526506Ananas comosusPhaseolus vulgaris13.2526.2480.71311forward
CNT30485914Ananas comosusOlea europaea12.2235.8379.44287forward
CNT30708177Ananas comosusGlycine max13.2529.5683.28311forward
CNT30289853Ananas comosusTriticum aestivum12.6938.1688.59298forward
CNT30221568Ananas comosusHordeum vulgare15.0333.7285.84353forward
CNT30387477Ananas comosusTriticum turgidum8.4838.2787.94199forward
CNT30562752Ananas comosusActinidia chinensis12.9924.1183.61305forward
CNT30554457Ananas comosusOryza glaberrima10.620.7385.14249forward
CNT30436081Ananas comosusAegilops tauschii8.2637.9688.66194forward
CNT30243799Ananas comosusAvena sativa12.144.3188.73284forward
CNT30659938Ananas comosusTriticum dicoccoides9.6342.1688.05226forward
CNT30262014Ananas comosusBrassica rapa8.3942.9279.19197forward
CNT30452520Ananas comosusSaccharum spontaneum15.0323.5587.82353forward
CNT30132672Ananas comosusLolium perenne14.1859.6885.59333forward
CNT30219415Ananas comosusKalanchoe fedtschenkoi6.4348.482.78151forward
CNT3067780Ananas comosusLeersia perrieri4.3921.5592.23103forward
CNT30213985Ananas comosusHelianthus annuus5.3223.5480.8125forward
CNT30680618Ananas comosusTriticum urartu12.6931.0188.59298forward
CNT30340460Ananas comosusEragrostis tef14.7840.8288.18347forward
CNT30620949Ananas comosusCajanus cajan13.292982.37312forward
CNT30370789Ananas comosusOryza glumipatula13.2522.689.71311forward
CNT30328621Ananas comosusAsparagus officinalis5.8846.3185.51138forward
CNT30147934Ananas comosusBrachypodium distachyon9.4158.0185.52221forward
CNT30102551Ananas comosusOryza rufipogon8.3921.2788.83197forward
CNT30577064Ananas comosusOryza barthii9.830.188.26230forward
CNT30581058Ananas comosusEchinochloa crusgalli11.1226.7489.27261forward
CNT30496270Ananas comosusDigitaria exilis9.672387.22227forward
CNT30116923Ananas comosusOryza nivara12.5235.3488.44294forward
CNT30604352Ananas comosusOryza punctata8.4334.3890.4198forward
CNT30551395Ananas comosusOryza brachyantha12.4833.8386.69293forward

Expression of CNT30229721

Peptides detected in this lncRNA

>peptide 1 (80 aa)
MARRACLISASCKVSFFSGSDARPSGSKYFPPGYSLFSGSSSAFRWNSMYPMTRTSIHISVVMEKGRGRPRYEDPSTNST*

>peptide 2 (89 aa)
MEGRCYLGVGDRTVDKGVEIYLTAVMLGTLSPPYLRGNSVWDLLMTRGMLRLGKEKDRRERCLWLEFEDGCGIFTILCVGSRKYRLQLS*

>peptide 3 (34 aa)
MTSPAEFLAKFWSSESSSNCKYSAGLPRPKGSKP*

>peptide 4 (44 aa)
MTEIINRSHSTPLIINFISSQINPVLSGLCTPRERDHNEIKLVR*

>peptide 5 (30 aa)
MHLGRGGGGGGEGVEDGGVEGVTEVSSPVV*

>peptide 6 (33 aa)
MDVVYSLFCVSDQGNIVCNYRNCRTWFFLKINK*

Sequence

>CNT30229721
ATTACAACAACCAACGGCAACGGGCAGGTAATAAAAAGCTCCGAAATGCAAATAGGCGATTAATCAGGTAATAATAGTTAATTTAAAGCTTGTAAAAGCG
TTCCAAGTAAAAACATAACATTTTTTACAAGATGACGGAGATCATTAATCGATCACACAGTACTCCTCTAATAATTAACTTCATATCCTCACAAATTAAT
CCAGTTTTGAGTGGACTATGTACTCCAAGAGAGAGAGATCACAATGAGATCAAGCTAGTACGGTAACCGTAGGACACCATGCATTTAGGAAGAGGAGGAG
GAGGAGGAGGAGAAGGTGTCGAAGATGGTGGTGTGGAGGGGGTCACTGAGGTGAGTAGCCCAGTTGTTTAGCGGGCCCTTGCCGGTGACGGCGGCTTGGA
CGGCGAAGCCCAGGAAGGCGACCATGGCGAGGCGGGCGTGCTTGATCTCGGCCAGCTGCAAGGTTTCCTTCTTCTCCGGGTCGGACGCGAGGCCCAGCGG
GTCGAAGTACTTCCCCCCGGGATACAGCCTCTTCTCGGGGTCCAGCTCGGCGTTCCGCTGGAACTCGATGTACCCGATGACCAGAACCTCGATCCATATC
AGCGTAGTGATGGAGAAAGGAAGAGGGAGGCCGAGGTACGAAGATCCATCCACCAACTCAACCTGATATATATATATATATACATATATGATCGCGCCTC
GTCCAAATTATATAAGGAACATTTCATAAATTTGCCATATTCAATTTTCTACATTTGATATATATATATATATCTATCATAAAGAGGGAGCATCATTGAT
GTTATGTTTGATGATGTTGTTCCTACTACGTTCATAATTTAGTAAGTAATGAGCTTCTAATTGAGGTTCAGAATTAATATATATCTTGGTTTGCTTTAAT
TGTGAACTACACTTGTACGCACATAGGGAGCTGGAGCTGATGGATATATGCATGATGATATATAGTATATATATATATATGTATATATACAGACCTTGCC
GGCGTCCTGCCAGGTGACGCCGGTGAGGGACTCGACGGCAAGGGCGCCGAGGGTGGCGAGCATGGCCCAGCGGCCGTGGATGAGCTCGCACTCGCGGAAG
CGCTGCAGGCCGAAGACCTCGCTGTAGGGCTGGAAGGGCGTCGACTTGACGTCGGCGGTCTCGGAACGCGTGCCGATGACGTCGCCGGCCGAGTTCTTGG
CCAAATTCTGGTCCAGCGAATCCAGCTCGAACTGCAAGTACTCGGCCGGCTTGCCCAGGCCGAAGGGGTCGAAGCCGTAGTCGCCGACCAGCGAGCCGTC
CAGCCACTCCGGCGCCTTCGCGCCCGGGTACCACAGCGGCCGGTCCGTGCCCCCCGACGTGGCTTTCTTTTTCGGGGCCGATTTCTTCTTTCCGAACCCG
AACCGCGCCGCGAACCGGCCCCGGGTCTGAACCGGCTCCGCGAGCCGGGTTCCCAGGAACGGCGAGGCTGATGCGGCGGAGGCCATGTTATTATGCTTCG
CTCGGCTTCACCCCAACCCCACCCCCCCCCTCCCAAAAAACTAATACAAATTAAACAAAAGAGTTTTGAGTTGAGCTGAGCTGAGCTGAGCTGAGCTGGG
GAAGAGAGTGGAGTGCTGCGTGGAGCTCGATTTCTTTGCCTGGGGACGTGATGGGGATTTTATGGAGGGGAGGTGTTATCTGGGAGTGGGAGATCGGACG
GTTGACAAGGGGGTTGAGATCTATTTGACGGCTGTGATGTTGGGGACCTTATCTCCTCCTTATCTTCGAGGGAACTCGGTTTGGGATTTGTTGATGACAC
GTGGGATGCTGCGATTGGGAAAAGAGAAAGATCGGAGGGAGCGGTGTTTATGGCTCGAATTTGAGGATGGATGTGGTATATTCACTATTCTGTGTGTCGG
ATCAAGGAAATATCGTCTGCAACTATCGTAACTGTCGAACTTGGTTTTTTTTAAAAATAAATAAATAAATAAATAAATAATCTAATTTTTTATTACGATA
ACAATAAAGTGTTTGGTTAAGAAAATAAAATAAAATAAAAATTTTAATTATAGTGAAGGACTAAAATAAACTTTTAACCTTCCAAGTATAAAGTTTTAAT
TGGAGCTTTCAGTTTTGCTACTAAACTAAAATGTTAAGAAATTTTTAATTGAAAAGCTGCTTTGCTTAACTATACTTCTGCAGAATGCCTGATCGTGCTA
ATAGGCTCAAAGTACCGAAGCTAGGATTCTTGCATCTTATATTCTTTTTTCTTTTTTTTGATAAATTTTGAATTAATAAATGCCTTGTTTCTAAAGTTAT
ATTTTTTTACATTTTTGTGGTTAATCTCAGATTACCTTGGTGTTTCTT