Detailed information on CNT30102749


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XF88|CB4B_ARATH, E-value = 3e-57

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672312Oryza rufipogonSetaria viridis20.7531.2492.36144forward
CNT30640553Oryza rufipogonNymphaea colorata29.3925.3483.33204forward
CNT30375654Oryza rufipogonArabidopsis thaliana14.2720.4584.8599forward
CNT30290500Oryza rufipogonTriticum aestivum31.742.6490.91220forward
CNT30221568Oryza rufipogonHordeum vulgare31.721.0182.27220forward
CNT30386996Oryza rufipogonTriticum turgidum31.740.6789.55220forward
CNT30436081Oryza rufipogonAegilops tauschii42.5157.7390.51295forward
CNT30243897Oryza rufipogonAvena sativa43.2366.8288.67300forward
CNT30659570Oryza rufipogonTriticum dicoccoides43.3754.9386.05301forward
CNT30453511Oryza rufipogonSaccharum spontaneum31.741.7592.73220forward
CNT30338967Oryza rufipogonEragrostis tef20.7529.5190.28144forward
CNT30328621Oryza rufipogonAsparagus officinalis11.8227.5285.3782forward
CNT30147796Oryza rufipogonBrachypodium distachyon16.8629.4794.02117forward
CNT30581253Oryza rufipogonEchinochloa crusgalli43.3749.5192.03301forward
CNT30556512Oryza rufipogonPanicum hallii15.7122.4793.58109forward
CNT30551395Oryza rufipogonOryza brachyantha31.725.495.45220forward

Expression of CNT30102749

Peptides detected in this lncRNA

>peptide 1 (67 aa)
NFININTCQVKSMQCAYVHSQSHSLSQIPRSIDRCTSGCINSSSWVFLYYKSPPCKSPLTTNPALLI*

>peptide 2 (31 aa)
MTSTSIQISVEIENGSGCPRNVLAAAATDDAM

>peptide 3 (37 aa)
MQVAINHQPSSPNLSSNQQKDDLSSLHTLPARSSSQN*

>peptide 4 (42 aa)
MTSPLSIPSQLARHHKTKPRARTHTNASIPFELRAKELKLRG*

>peptide 5 (42 aa)
MCIHSHTHLVKYQDRSIDVQVDALIHHLGCSYITNHHHASRH*

>peptide 6 (53 aa)
MVVWSGSLRWVAQLLRGPLPVAAATMARRACLISASCSRSFFSGSDANPSGSK*

Sequence

>CNT30102749
TAACTTTATTAATATCAATACATGTCAGGTAAAGTCTATGCAGTGTGCATATGTGCATTCACAGTCACACTCACTTAGTCAAATACCAAGATCGATCGAT
CGATGTACAAGTGGATGCATTAATTCATCATCTTGGGTGTTCTTATATTACAAATCACCACCATGCAAGTCGCCATTAACCACCAACCCAGCTCTCCTAA
TTTAAGTAGTAATCAACAAAAGGATGACCTCTCCTCTCTCCATACCCTCCCAGCTCGCTCGTCATCACAAAACTAAACCGCGCGCGCGAACGCACACCAA
CGCATCGATCCCGTTTGAATTGCGCGCGAAAGAGCTTAAATTAAGAGGATGAGGAGAAGGTGTCGAAGATGGTGGTGTGGAGCGGGTCGCTGAGGTGGGT
GGCCCAGTTGTTGAGGGGCCCCTTGCCGGTGGCGGCGGCGACCATGGCGAGGCGGGCGTGCTTGATCTCCGCCAGCTGCAGCCGCTCCTTCTTCTCCGGG
TCCGACGCCAACCCGAGCGGGTCGAAGTAGGACCCCCCCGGGTACAGCCTCTTCTCCGGGTCCAGCTCCGCGTTGCGCTGGAACTCGATGTAGCCGATGA
CGAGCACCTCGATCCAGATCAGCGTCGAGATCGAGAACGGCAGTGGCTGCCCCAGGAACGTGCTCGCCGCCGCTGCCACCGACGACGCCATGGC