« Back to Avena sativa search


Detailed information on CNT30243799


BLAST search results

BLAST vs Swiss-Prot:
sp|P08222|CB22_CUCSA, E-value = 7e-20

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695032Avena sativaOryza sativa50.5549.1791.05324forward
CNT30520570Avena sativaSetaria italica51.9534.0592.19333forward
CNT30640553Avena sativaNymphaea colorata38.3830.5683.74246forward
CNT30513329Avena sativaJuglans regia42.4342.3780.51272forward
CNT30276136Avena sativaChenopodium quinoa26.0532.4381.44167forward
CNT30526506Avena sativaPhaseolus vulgaris44.7724.2279.79287forward
CNT30289853Avena sativaTriticum aestivum52.8943.4194.1339forward
CNT30659938Avena sativaTriticum dicoccoides36.5143.6694.87234forward
CNT30452520Avena sativaSaccharum spontaneum51.9522.2191.59333forward
CNT30229721Avena sativaAnanas comosus44.3112.188.73284forward
CNT30219415Avena sativaKalanchoe fedtschenkoi32.4566.6779.33208forward
CNT30680618Avena sativaTriticum urartu52.8935.2894.4339forward
CNT30620949Avena sativaCajanus cajan44.3126.3980.99284forward
CNT30596639Avena sativaOryza meridionalis42.4316.4489.71272forward
CNT30147934Avena sativaBrachypodium distachyon34.9558.7992.41224forward
CNT30577064Avena sativaOryza barthii40.7234.1690.04261forward
CNT30581346Avena sativaEchinochloa crusgalli46.849.4292.33300forward
CNT30551395Avena sativaOryza brachyantha53.0439.2690.59340forward

Expression of CNT30243799

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MVVCSGSLRWVAQLLSGPLPVAAACTAKPRKATMARRACLISASCRVSFFSGSAARPSGSK*

>peptide 2 (47 aa)
MRPFCGAGSARRDPRNELAAAATDEAMATLSLLLVLPGLCVALWIEVA

>peptide 3 (35 aa)
SLQNRIHCSRPPRLATGRALKRSPRCRRWWCAAGR*

Sequence

>CNT30243799
GAGCTTACAGAACCGTATACACTGCTCTCGACCACCGAGACTAGCGACCGGCCGCGCGCTTAAGAGGAGCCCAAGGTGTCGAAGATGGTGGTGTGCAGCG
GGTCGCTGAGGTGGGTGGCCCAGTTGTTGAGTGGGCCCTTGCCGGTGGCGGCGGCCTGCACGGCGAAGCCGAGGAAGGCGACCATGGCGAGGCGCGCGTG
CTTGATCTCCGCCAGCTGCAGGGTTTCCTTCTTCTCAGGGTCCGCCGCGAGACCCAGCGGGTCGAAGTAGGAGCCGCCGGGGTACAGCCGCCTCTCCGGG
TCCAGCTCAGCGTTGCGCTGGAACTCGATGTAGCCGATCACCAGCACCTCGATCCAGATGAGGGTCGTGATCGTGAAGGGCAACGGCTGACCCAGGTACG
AAGACCCGGAAGACGCTACGTACCTTTCCGGCATCCTGCCAGGTGACGCCGGTGAGCCACTCGACGGTGAGGGCGCCGAGGCCGAACCGCGCCACGATGC
GCCCGTTCTGCGGCGCTGGGTCTGCCAGACGGGACCCGAGGAACGAGCTCGCCGCGGCGGCCACCGACGAAGCCATGGCTACTCTCTCACTCCTGCTTGT
CCTCCCCGGCCTTTGCGTGGCTTTGTGGATTGAGGTGGCGC