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Detailed information on CNT30596639


BLAST search results

BLAST vs Swiss-Prot:
sp|P15192|CB22_PINSY, E-value = 1e-15

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694831Oryza meridionalisOryza sativa47.0757.3694.35779forward
CNT30520570Oryza meridionalisSetaria italica17.5229.6592.76290forward
CNT30375654Oryza meridionalisArabidopsis thaliana8.127.6981.34134forward
CNT30276136Oryza meridionalisChenopodium quinoa6.2820.1984.62104forward
CNT30289853Oryza meridionalisTriticum aestivum16.3134.5792.22270forward
CNT30386996Oryza meridionalisTriticum turgidum14.845.2990.2245forward
CNT30436081Oryza meridionalisAegilops tauschii12.9942.0790.7215forward
CNT30243799Oryza meridionalisAvena sativa16.4442.4389.71272forward
CNT30659938Oryza meridionalisTriticum dicoccoides15.5948.1389.92258forward
CNT30453511Oryza meridionalisSaccharum spontaneum17.9556.3692.93297forward
CNT30680853Oryza meridionalisTriticum urartu17.8252.8792.2295forward
CNT30577064Oryza meridionalisOryza barthii34.6875.1396.86574forward
CNT30581456Oryza meridionalisEchinochloa crusgalli17.3449.9196.17287forward
CNT30556512Oryza meridionalisPanicum hallii8.3428.4593.48138forward
CNT30551395Oryza meridionalisOryza brachyantha20.9740.0789.05347forward

Expression of CNT30596639

Peptides detected in this lncRNA

>peptide 1 (58 aa)
DRCTSGCINSSSGVHILQITTMQVAINHQPSSPNLSSNQQKDDLSSLHTLPARSSSQN*

>peptide 2 (54 aa)
MVVWSGSLRGPLPVAAACTAKPRKATMARRACLISASCSRSFFSGSDANPSGSK*

>peptide 3 (52 aa)
MISPALFLARFWSSESSSNCRNVLAAAATDDAMAALLLLLLLLRECVGGGEGG

>peptide 4 (51 aa)
MYRGVSYTLPASCQVTPVSHSTERAPRVASMAQRPWMSSHSRKRWRPNTSV*

>peptide 5 (34 aa)
MTSPLSIPSQLARHHKTKPRARTHTNARKRIDPV*

>peptide 6 (35 aa)
SIDVQVDALIHHRVFIYYKSPPCKSPLTTNPALLI*

>peptide 7 (29 aa)
MTSTSIQISVEIENGSGCPRYDDPSTSST*

Sequence

>CNT30596639
TCGATCGATGTACAAGTGGATGCATTAATTCATCATCGGGTGTTCATATATTACAAATCACCACCATGCAAGTCGCCATTAACCACCAACCCAGCTCTCC
TAATTTAAGTAGTAATCAACAAAAGGATGACCTCTCCTCTCTCCATACCCTCCCAGCTCGCTCGTCATCACAAAACTAAACCGCGCGCGCGAACGCACAC
CAACGCACGCAAACGCATCGATCCCGTTTGAATTGCGCGCGAAAGAGCTTAAATTAAGAGGAGGAGAAGGTGTCGAAGATGGTGGTGTGGAGCGGGTCGC
TGAGGGGCCCCTTGCCGGTGGCGGCGGCCTGCACGGCGAAGCCGAGGAAGGCGACCATGGCGAGGCGGGCGTGCTTGATCTCCGCCAGCTGCAGCCGCTC
CTTCTTCTCCGGGTCCGACGCTAACCCGAGCGGGTCGAAGTAGGACCCCCCCGGGTACAGCCTCTTCTCCGGATCCAGCTCCGCGTTGCGCTGGAACTCG
ATGTAGCCGATGACGAGCACCTCGATCCAGATCAGCGTCGAGATCGAGAACGGCAGCGGCTGCCCCAGGTACGACGACCCATCCACCAGCTCCACCTGAA
AAACATCATCGGACCATTCCTACGTCAGTGTCATCGTCCTCGTCCGCGGCGGCGGCGACATGTGTAGTAATCAGGGTTTTAAATATTCAGCTATAGCTGT
TTGAGAAAGATATAGCTATTTGCTCTCATGTACAATCTAGTCGTAGCTGCCACTATTTTGAGAAGGCTAATCGCTAAATAGTTTAGCCCACTATTTGAAA
GTGAGAAATGACCTGGGTTTGAAGTTTTACTCTTTCTAATTATTTGATATTAGGTCATTTTTTAATGTTTGTGTGTTTTTTTAGCAAATTTCACAAAACT
ACATGTTTTATGATTTAAGTTGCAGAAAACCACACACATTTTGATACTTGGCACTTAAGTACATATATTTTGGTAGTTTAGTTTCACGAAACCACACTAT
CGATGGATTCACCCGTGAGATGACATGGTTGTTCCATCTAAGATGAGAACGTGACATCCTATTAATTTTGTGCGATGGCTGGTAATATGATGCCATGTCT
TCGTTCTGGGTGAAACAGTCACGTCATCTCGCGGGTGAATCCATTCATTGATAGTGTGGTTTCGTGAAACTACGCTACCAAAATATATGTACTTAATTGT
CAAGTGTCAAAGTGTGTGTGGTTTTCTGCAACTTAGACCACAAAACGTGTAGTTTTGTGAAATTTACTCTTTTTTTTTAAACGCTGGTAGTAATGTATAG
GGGAGTATCGTATACCTTGCCGGCGTCTTGCCAGGTGACGCCGGTGAGCCACTCGACGGAGAGGGCGCCGAGGGTGGCGAGCATGGCCCAGCGGCCGTGG
ATGAGCTCGCACTCGCGGAAGCGCTGGAGGCCGAACACCTCGGTGTAGGGCTGGAACGGGGTGGACTTCACCTCGCCGGTCTCGAACCGGGTGCCGATGA
TCTCGCCGGCGTTGTTCTTGGCCAGGTTCTGGTCCAGCGAGTCCAGCTCGAACTGCAGGAACGTGCTCGCCGCCGCTGCCACCGACGACGCCATGGCTGC
TCTTCTCCTCCTTCTTCTTCTTCTTCGAGAATGTGTGGGTGGTGGTGAGGGGGGG