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Detailed information on CNT30452520


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9S7W1|CB4C_ARATH, E-value = 2e-59

BLAST vs NONCODE:
NONBRAT002959, E-value = 2e-14

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695032Saccharum spontaneumOryza sativa22.8251.993.57342forward
CNT30672010Saccharum spontaneumSetaria viridis20.4151.9595.75306forward
CNT30520570Saccharum spontaneumSetaria italica42.2964.8391.01634forward
CNT30640553Saccharum spontaneumNymphaea colorata12.4723.2390.37187forward
CNT30513329Saccharum spontaneumJuglans regia16.5438.6381.05248forward
CNT30375654Saccharum spontaneumArabidopsis thaliana19.8861.5777.52298forward
CNT30526506Saccharum spontaneumPhaseolus vulgaris18.4123.2979.71276forward
CNT30485914Saccharum spontaneumOlea europaea18.1533.9679.78272forward
CNT30708158Saccharum spontaneumGlycine max18.1532.8183.82272forward
CNT30289853Saccharum spontaneumTriticum aestivum21.4841.2391.93322forward
CNT30221568Saccharum spontaneumHordeum vulgare23.6233.8189.55354forward
CNT30562752Saccharum spontaneumActinidia chinensis23.6828.0681.97355forward
CNT30554457Saccharum spontaneumOryza glaberrima16.6120.7392.77249forward
CNT30243799Saccharum spontaneumAvena sativa22.2151.9591.59333forward
CNT30659938Saccharum spontaneumTriticum dicoccoides15.4843.2892.67232forward
CNT30132672Saccharum spontaneumLolium perenne22.2159.6888.29333forward
CNT30229721Saccharum spontaneumAnanas comosus23.5515.0387.82353forward
CNT3067780Saccharum spontaneumLeersia perrieri8.1425.5296.72122forward
CNT30213985Saccharum spontaneumHelianthus annuus8.7424.6781.68131forward
CNT30680618Saccharum spontaneumTriticum urartu21.4833.5191.93322forward
CNT30720416Saccharum spontaneumTriticum spelta13.9434.7887.08209forward
CNT30340460Saccharum spontaneumEragrostis tef23.4241.2993.73351forward
CNT30620949Saccharum spontaneumCajanus cajan18.2125.3780.95273forward
CNT30596550Saccharum spontaneumOryza meridionalis16.4130.389.43246forward
CNT30370789Saccharum spontaneumOryza glumipatula20.6822.5392.26310forward
CNT30147934Saccharum spontaneumBrachypodium distachyon14.7458.0195.02221forward
CNT30102551Saccharum spontaneumOryza rufipogon15.4124.9593.51231forward
CNT30581346Saccharum spontaneumEchinochloa crusgalli20.3550.2593.77305forward
CNT30496270Saccharum spontaneumDigitaria exilis15.2123.194.3228forward
CNT30116923Saccharum spontaneumOryza nivara19.6135.3491.16294forward
CNT30604352Saccharum spontaneumOryza punctata12.9433.6894.85194forward
CNT30556732Saccharum spontaneumPanicum hallii11.7422.5694.32176forward
CNT30551395Saccharum spontaneumOryza brachyantha21.5537.393.5323forward

Expression of CNT30452520

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MVVWSGSLRWVAQLLSGPLPVAAACTAKPRKATMARRACLISASCSRSFFSGSAARPSGSK*

>peptide 2 (34 aa)
MTAPGSFLARFWSSESNSNCRYSTGFPSPNGSNP*

>peptide 3 (38 aa)
MCLPRRPLRKPWLLLLLRLLGVLRLVVVCGAGLVTAYK*

>peptide 4 (58 aa)
MRPFCGAGSARRVPRNVLAAAATEEAMAATTPSPPWCAEVGGGVWCGARHGLQIEKSL*

>peptide 5 (36 aa)
MKPRTTGSSISRLIEIIVNSRTRFDRWTGRSNGGLN*

Sequence

>CNT30452520
CAGAGTTCGGATACATTTGCTAGTATATATAAAAGATTGACTCAAAACTTCCATCGCCACTACGTGCATCCATTTAATTAGGCCACATACGTACACTACA
CTACGATCTAACAAAACTAACCATGGTGCATCTTATATATCCTCGGTCACCTCAAGATGTGTACAAGTGAATGCATTAATTCATCACTGGTTCATATATT
ACAAATCACCAAGTCCCAGCTGCAGCTCTCCTGATTAACGAGATCTCCATTAACAAAGGATCGATCTTGTCCCATACCCTCTCTCTCTCACTCATCACAA
AATGAAACCACGCACGACGGGTTCATCCATCTCCAGGCTCATAGAGATCATAGTTAATTCAAGAACACGTTTCGATCGATGGACAGGGCGGAGCAACGGC
GGGCTTAATTAAGAGGATGCTCCGAACGTGTCGAAGATGGTGGTGTGGAGCGGGTCGCTCAGGTGGGTGGCCCAGTTGTTGAGCGGCCCCTTGCCGGTGG
CGGCGGCCTGCACGGCGAAGCCGAGGAAGGCGACCATGGCGAGGCGCGCGTGCTTGATCTCCGCCAGCTGCAGCCGCTCCTTCTTCTCCGGGTCGGCCGC
CAGGCCGAGCGGGTCGAAGTAGGAGCCGCCGGGGTACAGCCTCTTCTCTGGGTCGAGCTCGGCGTTGCGCTGGAACTCGATGTAGCCGATCACGAGCACC
TCGATCCAGATGAGCGTCGAGATGGAGAACGGCAGCGGCTGGCCCAGGTAGGAGGACCCGTCCACCAGCTCCACCTGCACGCCATCGCATTCACAGGTTG
GTTAGATCGTTCAAGCGCAGCGAGGATACACGAATCTGCATGTAAGCACTAGCTAGCTATTGACGTACCTTGCCGGCGTCCTGCCAGGTGACGCCGGTGA
GCCACTCGACGGAGAGGGCGCCGAGGGTGGCGAGCATGGCCCAGCGGCCGTGGATGAGCTCGCACTCGCGGAACCGCTGGAGGCCGAACACCTCGCTGTA
GGGCTGCAACGGGGTGGACTTGACGTCGGAGGACTCGAACCGGGTGCCGATGACGGCGCCGGGCTCATTCTTGGCCAGGTTCTGGTCCAGCGAATCCAAC
TCGAACTGCAGGTACTCCACGGGCTTCCCGAGCCCGAACGGGTCGAACCCGTAGTCGCCGACCAGCGAGCCGTCGAGGTAGTCGGGCGCCACGGCGCCGG
GGAACCACAGCGGCCGGTCAGAGGAGGTCTTGGACACCTTCTTCGGGGCAGCAGGCTTTTTCGCCTTTCCGAACCCGAACCCGAACCGGGCCACGATGCG
CCCGTTCTGCGGCGCCGGGTCCGCCAGGCGGGTGCCCAGGAATGTGCTTGCCGCGGCGGCCACTGAGGAAGCCATGGCTGCTACTACTCCTTCGCCTCCT
TGGTGTGCTGAGGTTGGTGGTGGTGTGTGGTGCGGGGCTCGTCACGGCCTACAAATAGAAAAGTCCTTATAGGAAATTCCGGTGTTATCTCTGGGTGGC