Detailed information on CNT30672312


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694831Setaria viridisOryza sativa37.3112.6791.86172forward
CNT30520284Setaria viridisSetaria italica94.3654.7297.93435forward
CNT30708123Setaria viridisGlycine max36.0112.4381.33166forward
CNT30290500Setaria viridisTriticum aestivum36.6632.7589.35169forward
CNT30221234Setaria viridisHordeum vulgare33.6225.8889.03155forward
CNT30386996Setaria viridisTriticum turgidum35.5730.3189.02164forward
CNT30562744Setaria viridisActinidia chinensis29.0721.5885.07134forward
CNT30436840Setaria viridisAegilops tauschii40.1345.6885.95185forward
CNT30244633Setaria viridisAvena sativa33.6228.6591.61155forward
CNT30454075Setaria viridisSaccharum spontaneum103.0452.0388.63475forward
CNT30131950Setaria viridisLolium perenne38.1834.3891.48176forward
CNT30680980Setaria viridisTriticum urartu36.6632.2589.35169forward
CNT30338967Setaria viridisEragrostis tef41.2138.9396.84190forward
CNT30620951Setaria viridisCajanus cajan31.4513.9481.38145forward
CNT30147796Setaria viridisBrachypodium distachyon34.2739.889.24158forward
CNT30102749Setaria viridisOryza rufipogon31.2420.7592.36144forward
CNT30577064Setaria viridisOryza barthii31.2418.8593.06144forward
CNT30580706Setaria viridisEchinochloa crusgalli36.6626.8393.49169forward
CNT30556512Setaria viridisPanicum hallii42.7340.6291.88197forward
CNT30551395Setaria viridisOryza brachyantha31.8916.9794.56147forward
CNT3039307Setaria viridisMarchantia polymorpha14.9720.7885.5169forward

Expression of CNT30672312

Peptides detected in this lncRNA

>peptide 1 (48 aa)
CTSECINSSLVHILQITSPHQQALLINETSINKLSDPSSHHTLSLITK*

Sequence

>CNT30672312
TGTGTACAAGTGAATGCATTAATTCATCACTGGTTCATATATTACAAATCACAAGTCCCCATCAGCAAGCTCTCCTAATTAACGAGACCTCCATTAACAA
ACTATCGGATCCATCTTCCCACCATACCCTCTCACTCATCACAAAATGATATCACGCACGCATGGGTTCATCCATCTCCGCCAGCTGATAGAGATCACAG
TTAATTAATTCAAGAACACGTTTCGATCGATGGACGACGGAGCAATGGCGGCTTAAGAGGATCCTCCGAACGTGTCGAAGATGGTGGTGCCGAGCGGGTC
GAAGTAGGAGCCGCCCGGGTAGAGCCTCTTCTCCGGGTCGAGCTCGGCGTTGCGCTGGAACTCGATGTAGCCGATCACGAGCACCTCGATCCAGATGAGT
GTCGAGATGGAGAAGGGCAGCGGCTGCCCCAGGTAGGACGACCCGTCCACAAGCTCAACCT