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Detailed information on CNT30556512


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694831Panicum halliiOryza sativa28.4510.1694.2138forward
CNT30672312Panicum halliiSetaria viridis40.6242.7391.88197forward
CNT30520284Panicum halliiSetaria italica41.4425.2896.02201forward
CNT30640553Panicum halliiNymphaea colorata31.9619.2583.23155forward
CNT30708123Panicum halliiGlycine max28.2510.2581.75137forward
CNT30290500Panicum halliiTriticum aestivum30.5228.6890.54148forward
CNT30221234Panicum halliiHordeum vulgare31.3425.3892.76152forward
CNT30386911Panicum halliiTriticum turgidum39.7941.2490.16193forward
CNT30562744Panicum halliiActinidia chinensis27.6321.5884.33134forward
CNT30554457Panicum halliiOryza glaberrima28.4511.4994.2138forward
CNT30436840Panicum halliiAegilops tauschii38.7646.4292.02188forward
CNT30244633Panicum halliiAvena sativa31.7528.4792.21154forward
CNT30659570Panicum halliiTriticum dicoccoides28.252589.05137forward
CNT30454075Panicum halliiSaccharum spontaneum41.0321.891.96199forward
CNT30132393Panicum halliiLolium perenne31.1325.7291.39151forward
CNT30680980Panicum halliiTriticum urartu30.5228.2490.54148forward
CNT30338967Panicum halliiEragrostis tef39.1838.9392.11190forward
CNT30596639Panicum halliiOryza meridionalis28.458.3493.48138forward
CNT30328621Panicum halliiAsparagus officinalis13.221.4887.564forward
CNT30147796Panicum halliiBrachypodium distachyon29.936.5290.34145forward
CNT30102749Panicum halliiOryza rufipogon22.4715.7193.58109forward
CNT30577064Panicum halliiOryza barthii22.4714.2794.5109forward
CNT30580706Panicum halliiEchinochloa crusgalli31.7524.4493.51154forward
CNT30551395Panicum halliiOryza brachyantha24.5413.7492.44119forward

Expression of CNT30556512

Peptides detected in this lncRNA

>peptide 1 (82 aa)
TSECINSSSLVHILQITKSQQQRLSLINETSINKRIGWIFPYPLTHHKMIPRTDSHPSSPAYDSRDHSYFKSSTVRSMDGRS*

Sequence

>CNT30556512
TACAAGTGAATGCATTAATTCATCATCACTGGTTCATATATTACAAATCACCAAGTCCCAGCAGCAGCGGCTCTCCCTAATCAACGAGACCTCCATTAAC
AAAAGGATCGGATGGATCTTCCCATACCCTCTCACTCATCACAAAATGATACCACGCACGGATTCACATCCATCGTCTCCAGCGTATGATAGCAGAGATC
ACAGTTACTTCAAGAGTAGCACGGTTCGATCGATGGACGGACGGAGCTAGCCATGGCGGGCGGGCTTAGGAGGATCCTGATAATCCGAACGTGTCGAAGA
TGGTGGTGTGCAGCGGGTCGCTGAGGTGGCCGCCGGGGTAGATCCTCTTCTCCGGGTCCAGCTCGGCGTTGCGCTGGAACTCGATGTAGCCGATCACGAG
CACCTCGATCCAGATGAGCGTCGAGATGGAGAAGGGCAGCGGCTGACCCAGGTAGGACGACCCGTCCACCAGCTCCACCTGCCAT