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Detailed information on CNT30179479


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671792Secale cerealeSetaria viridis12.2825.4587.0685forward
CNT30520532Secale cerealeSetaria italica37.4331.0284.94259forward
CNT30288841Secale cerealeTriticum aestivum77.1798.1697.94534forward
CNT30221568Secale cerealeHordeum vulgare38.7325.694.03268forward
CNT30387274Secale cerealeTriticum turgidum43.3566.9699300forward
CNT30436081Secale cerealeAegilops tauschii33.2445.0194.78230forward
CNT30244332Secale cerealeAvena sativa40.4634.4491.07280forward
CNT30659169Secale cerealeTriticum dicoccoides43.3538.5699300forward
CNT30133575Secale cerealeLolium perenne35.2638.3692.62244forward
CNT3013737Secale cerealeZea mays15.7523.3993.58109forward
CNT30680618Secale cerealeTriticum urartu42.9230.9198.65297forward
CNT30720416Secale cerealeTriticum spelta46.153.0892.16319forward
CNT30338965Secale cerealeEragrostis tef14.4531.8596100forward
CNT30581058Secale cerealeEchinochloa crusgalli34.2524.2887.76237forward
CNT30556732Secale cerealePanicum hallii28.182587.18195forward
CNT30551395Secale cerealeOryza brachyantha35.6928.5284.62247forward

Expression of CNT30179479

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MRPFCGAGSARRVPRNVLAAAATDEAMAARSS*

Sequence

>CNT30179479
ACATGTTTTTAGGGAAGATTCAGTGGTAGAGATCAAAGGGGCAGCAAAGCTCAGTGGCAGGGCGGTCCGGTCAATTCTGTAGTGTGATTGCACTTGCGTG
GATGCTATCTTCGTAATCGCAACAAAAGAAGAAGAAAAACAGCTCAAGATTGATGTACAAGTGGATGCATTTAAGTCACCATTGGTTCATATTTTACAAA
TCACCAAGTCCCAGCAGCTCTCCTATGTGATCAGACCTGCATTAATCAACAAAGGATCTTTGCGATGCCCTCTCATCCATCACTCGTCATACAAAAACCG
AAGCACGTTCGTACACGGACGGGCGTTCGTCCATTTTGCAGCTGAGCTGACAGAAATTGCTCGACGACCGACTACTTAAGAGGAGCCGAAGGGGTCGAAT
CCGTAGTCGCCGACGAGCGTGCCGTCGAGGTACTCGGGCGCCTGCGCGCCGGGGAACCACAGCGGCCGGTCGGTGGTCGGGGGCGCCTTGGCCTTCTTGG
GCGGGGCCTTCTTCTTGCCGAAGCCGAACCGCGCCACGATGCGCCCGTTCTGCGGCGCCGGGTCCGCCAGGCGGGTCCCGAGGAACGTGCTCGCCGCGGC
GGCCACCGACGAAGCCATGGCTGCTCGCTCCTCCTAGCTTGTCCTCCTCGGCCTTTGCGTGCGTTGAGGTGGCGGGTGGTGCTGGTGGTGTG