Detailed information on CNT3096210


BLAST search results

BLAST vs Swiss-Prot:
sp|Q38JH8|METK2_SOLTU, E-value = 3e-53

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30641111Solanum tuberosumNymphaea colorata28.7818.3282.68179forward
CNT30729630Solanum tuberosumCorchorus capsularis29.2622.2282.97182forward
CNT30508545Solanum tuberosumSolanum lycopersicum24.636.9683.01153forward
CNT30477236Solanum tuberosumArabidopsis halleri22.0328.4881.02137forward
CNT30355713Solanum tuberosumLactuca sativa23.6333.9585.71147forward
CNT30420528Solanum tuberosumPapaver somniferum40.3513.1785.26251forward
CNT3055147Solanum tuberosumAmborella trichopoda21.5413.8481.34134forward
CNT30331991Solanum tuberosumDioscorea rotundata29.4238.6981.42183forward

Expression of CNT3096210

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MQPRKQISISISMYDMMKLVYWSATRIMASTNLTGQKIVMQDLTQAFGLRTLTVSQA*

>peptide 2 (54 aa)
INKFHQTGSCMIKTYINWIKQGELKSQLLNNHYKLEIRYCRKGKERNRKITNVQ*

Sequence

>CNT3096210
ATAAACAAATTTCATCAGACAGGAAGTTGTATGATAAAAACATATATAAATTGGATAAAACAAGGAGAACTTAAATCACAGCTACTCAATAACCATTACA
AATTAGAAATAAGGTACTGCAGAAAAGGTAAAGAAAGAAATAGGAAAATAACAAATGTTCAGTGACTCGGAACGGAAACGCTTGTTCTCTTCTTCCAGCA
CCAATGCAGCCTAGAAAACAAATATCAATATCAATATCAATGTATGATATGATGAAGCTTGTTTATTGGTCCGCGACAAGAATAATGGCCAGTACAAATT
TAACTGGCCAAAAAATTGTAATGCAAGACCTCACTCAAGCTTTTGGCTTGAGGACCTTGACAGTCTCCCAGGCCTGAAGTCAAAGTTCTCCTTGATCAGA
ACCAAAATATCCTTGTCGGGAATTGTTCCTGTCTTGTAAGTGTCAACAAACACGGAAAGTGGTTCAGCCACACCGATAGCATAAGAAACCTGCACAATAC
AGCGACGAGCAAGTCCTGAGGCAACCACACTCTTTGCTGCCTGCCTAACAATGTAAGCACCACTCCTGTCCACCTTAGTGGGATCCTTTCCTGAGAAGGC
ACCTCCACCGTGAGCACCCCAG