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Detailed information on CNT3047442


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8W3Y4|METK_PHALU, E-value = 5e-82

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673492Prunus dulcisSetaria viridis55.9434.884.07339forward
CNT30521128Prunus dulcisSetaria italica57.147.2784.39346forward
CNT30698521Prunus dulcisQuercus lobata31.0233.5188.3188forward
CNT30374815Prunus dulcisArabidopsis thaliana57.4384.2683.05348forward
CNT30618114Prunus dulcisSesamum indicum36.4748.8986.88221forward
CNT3021108Prunus dulcisCitrullus lanatus37.2913.7382.74226forward
CNT30729630Prunus dulcisCorchorus capsularis38.9428.8285.59236forward
CNT30158121Prunus dulcisPistacia vera47.0345.682.81285forward
CNT30181754Prunus dulcisSecale cereale34.9833.786.32212forward
CNT30294498Prunus dulcisTriticum aestivum34.9826.5385.38212forward
CNT30225566Prunus dulcisHordeum vulgare38.4568.1381.97233forward
CNT30508545Prunus dulcisSolanum lycopersicum27.0639.6184.15164forward
CNT30144140Prunus dulcisMedicago truncatula46.3775.3484.34281forward
CNT30437887Prunus dulcisAegilops tauschii39.7734.4382.99241forward
CNT3082721Prunus dulcisBrassica juncea27.5657.7986.23167forward
CNT30218287Prunus dulcisKalanchoe fedtschenkoi31.3536.6184.74190forward
CNT30650534Prunus dulcisRosa chinensis55.9436.3785.55339forward
CNT30681758Prunus dulcisTriticum urartu34.9831.0985.38212forward
CNT30477100Prunus dulcisArabidopsis halleri17.1626.3384.62104forward
CNT30358838Prunus dulcisLactuca sativa32.0128.3682.99194forward
CNT30331991Prunus dulcisDioscorea rotundata27.0634.6784.15164forward
CNT30113343Prunus dulcisFicus carica29.3750.2886.52178forward

Expression of CNT3047442

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MSSPSSIGLITCSLRSAAISSFVTVSSCWVEIRTVWTRIGTMAPLSL*

>peptide 2 (32 aa)
LFHNLENFLVWDLPSAIRINKNRQRLRHTNGI*

>peptide 3 (31 aa)
MKLAQCTSWQVHWPQCSWQPASQCRPHSCPP*

>peptide 4 (45 aa)
MAEGHELRGLISGIAKHVALVTSTNLFRPFGQMAMDTLSNVRALLL

Sequence

>CNT3047442
CTCTTTCACAATCTTGAGAATTTCCTTGTCTGGGATCTTCCCAGTGCCATAAGAATCAACAAAAACAGACAAAGGCTCAGGCACACCAATGGCATATGAA
ACTTGCACAATGCACCTCCTGGCAAGTCCACTGGCCACAATGCTCTTGGCAGCCTGCCTCACAATGTAGGCCCCACTCCTGTCCACCTTAGTTGGGTCCT
TCCCAGAGAAGGCACCACCACCATGAGCTCCCCATCCTCCATAGGCTTGATCACATGCTCCTTGAGATCAGCAGCAATCTCATCGTTTGTCACAGTCTCG
TCGTGCTGGGTCGAAATTAGGACAGTGTGGACACGAATTGGAACCATGGCACCCTTGTCATTGTAGTACTCAACAGTCACTTGGGTCTTGCCATCAGGCC
TCAACCAAGCACAAGTACCATTCTTGCGAACCTCGGTGAGCTTAGCACCGAGCTTGGTTGCAAGGACATGGCTGAGGGGCATGAGCTCAGGGGTCTCATC
AGTGGCATAGCCAAACATGTGGCCTTGGTCACCAGCACCAATCTCTTCAGGCCTTTTGGTCAAATGGCCATGGACACCTTGAGCAATGTCAGGGCTCTGC
TGCTCA