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Detailed information on CNT30113343


BLAST search results

BLAST vs Swiss-Prot:
sp|P93438|METK2_ORYSJ, E-value = 3e-61

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673492Ficus caricaSetaria viridis54.5219.8286.53193forward
CNT30521128Ficus caricaSetaria italica54.5226.3786.53193forward
CNT30729630Ficus caricaCorchorus capsularis31.0713.4383.64110forward
CNT30628634Ficus caricaVigna unguiculata51.1325.1488.95181forward
CNT30194995Ficus caricaPisum sativum25.429.4586.6790forward
CNT30495282Ficus caricaOlea europaea29.946.0289.62106forward
CNT3047442Ficus caricaPrunus dulcis50.2829.3786.52178forward
CNT30158121Ficus caricaPistacia vera53.6730.488.95190forward
CNT30181754Ficus caricaSecale cereale49.4427.8286.86175forward
CNT30294498Ficus caricaTriticum aestivum49.4421.986.86175forward
CNT30561874Ficus caricaActinidia chinensis33.0513.2790.6117forward
CNT30508429Ficus caricaSolanum lycopersicum24.5835.2286.2187forward
CNT30662024Ficus caricaTriticum dicoccoides49.4434.4586.86175forward
CNT3082721Ficus caricaBrassica juncea39.5548.4485140forward
CNT30471855Ficus caricaSaccharum spontaneum51.4119.7889.01182forward
CNT30606743Ficus caricaGossypium raimondii29.949.9384.91106forward
CNT30650534Ficus caricaRosa chinensis54.5220.7188.6193forward
CNT30368062Ficus caricaSorghum bicolor40.1112.9290.85142forward
CNT30620815Ficus caricaCajanus cajan26.2712.7287.193forward
CNT30597069Ficus caricaOryza meridionalis43.797.7584.52155forward
CNT30355133Ficus caricaLactuca sativa27.1210.9786.4696forward
CNT30421092Ficus caricaPapaver somniferum40.6821.5682.64144forward
CNT30571189Ficus caricaVitis vinifera53.6730.8486.32190forward
CNT3025933Ficus caricaPopulus trichocarpa55.0827.9488.21195forward
CNT30148817Ficus caricaBrachypodium distachyon25.997.9694.5792forward
CNT30101810Ficus caricaOryza rufipogon42.665.9688.74151forward

Expression of CNT30113343

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MAERHELRGFIGGITKHVTLVTGTNLLRALSKVAVDTLSNI

>peptide 2 (46 aa)
MTKRPEGFRWKMVFSSRYFSGMTGLITCSLRSAAISSFVTVSSCCV*

>peptide 3 (55 aa)
MLLEVSSNLVICNGLIVLCLSQEQVPFFLTSVRRAPSLVARTWLRGMSSGVSSVA*

Sequence

>CNT30113343
CCTGCATCACCGTGAGGGCCACCAATGACAAAGCGGCCTGAGGGGTTCAGGTGGAAGATGGTTTTCTCGTCGAGGTACTTCTCAGGGATGACAGGCTTGA
TCACATGCTCCTTGAGGTCAGCAGCAATCTCGTCATTTGTAACGGTCTCATCGTGCTGTGTCTGAGCCAAGAGCAGGTACCATTCTTCCTGACCTCGGTG
AGGCGAGCTCCGAGCTTGGTTGCAAGGACATGGCTGAGAGGCATGAGCTCAGGGGTTTCATCGGTGGCATAACCAAACATGTGACCCTGGTCACCGGCAC
CAATCTCCTCAGGGCGCTTAGTAAAGTGGCCGTGGACACCCTGAGCAATATCAG