« Back to Camelina sativa search


Detailed information on CNT30312353


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30315993Camelina sativaCorylus avellana90.4936.9981.4371forward
CNT30616511Camelina sativaSesamum indicum98.5461.8781.19404forward
CNT30506119Camelina sativaNicotiana attenuata97.0799.7579.4398forward
CNT3091361Camelina sativaSolanum tuberosum63.4135.3783.08260forward
CNT30508941Camelina sativaSolanum lycopersicum63.4165.4982.69260forward
CNT30171519Camelina sativaTrifolium pratense24.6329.7188.12101forward
CNT30468540Camelina sativaSaccharum spontaneum59.7628.2984.49245forward
CNT30141877Camelina sativaLolium perenne61.2256.0382.07251forward
CNT3016767Camelina sativaZea mays53.929.2384.16221forward
CNT30605857Camelina sativaGossypium raimondii75.3738.186.08309forward
CNT30216750Camelina sativaKalanchoe fedtschenkoi90.4975.7179.25371forward
CNT30648253Camelina sativaRosa chinensis98.5460.5781.19404forward
CNT30688162Camelina sativaTriticum urartu76.5946.7379.94314forward
CNT30341749Camelina sativaEragrostis tef64.1559.182.13263forward
CNT30366537Camelina sativaSorghum bicolor77.3236.3581.07317forward
CNT30620243Camelina sativaCajanus cajan58.2971.9980.75239forward
CNT30154934Camelina sativaPrunus persica97.0786.1584.42398forward
CNT30573855Camelina sativaVitis vinifera87.5659.6382.45359forward
CNT30705868Camelina sativaPrunus avium96.3437.1985.06395forward
CNT30642143Camelina sativaCannabis sativa89.0288.8184.38365forward
CNT3051702Camelina sativaAmborella trichopoda86.157.6879.32353forward
CNT30150463Camelina sativaBrachypodium distachyon72.9334.0280.94299forward
CNT30497905Camelina sativaDigitaria exilis52.4423.8183.72215forward
CNT30176441Camelina sativaVigna angularis89.0260.3381.1365forward
CNT30558075Camelina sativaPanicum hallii61.9532.1982.28254forward
CNT30114394Camelina sativaFicus carica34.8824.0385.31143forward

Expression of CNT30312353

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MLDCKMAMLDCMQVKSGYKQVMLGCKQAKSGCSLVMLGCS*

>peptide 2 (29 aa)
MLDCSLETLDCSLETWGCSSERWENRKDL*

Sequence

>CNT30312353
CTGTAACTTGGTGAAGTTGGGCTGTAGCCAGGAGAAGTGGGGCTGTATGCAGGTGAAGTAGGACTGTAAGATGGTGATGTGGGACTATAGGATGGTGAGG
TAGGGCTGTAAGAAGGCGATGTTGGACTGTAAGATGGCGATGTTGGACTGTATGCAGGTGAAGTCGGGCTATAAGCAGGTGATGTTGGGCTGTAAGCAGG
CGAAGTCGGGCTGTAGCTTGGTGATGTTGGGCTGTAGCTAGGAGATGTTGGACTGTAGCTTGGAGACGTTGGACTGTAGCTTGGAGACGTGGGGCTGTAG
CTCGGAGAGGTGGGAGAATAGGAAGGACTTGTAGGAGAATAAGCAGGGCTTGTTGGACTATAGCCAGGAGAACTGGGACTGTAGGTAGGCGAAGTGGGAC
TATAACCGGG