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Detailed information on CNT30616482


BLAST search results

BLAST vs Swiss-Prot:
sp|P18616|NRPB1_ARATH, E-value = 6e-80

BLAST vs NONCODE:
NONSTUT001430, E-value = 1e-61

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640872Sesamum indicumNymphaea colorata27.2154.8280.24415forward
CNT30516792Sesamum indicumJuglans regia45.2577.5381.74690forward
CNT30376704Sesamum indicumArabidopsis thaliana38.4374.3781.4586forward
CNT30269243Sesamum indicumChenopodium quinoa37.3162.4679.96569forward
CNT3021339Sesamum indicumCitrullus lanatus36.4687.778.24556forward
CNT30628927Sesamum indicumVigna unguiculata22.7561.9679.83347forward
CNT30489068Sesamum indicumOlea europaea14.4944.7489.14221forward
CNT30508793Sesamum indicumSolanum lycopersicum20.279.7983.44308forward
CNT30145737Sesamum indicumMedicago truncatula20.3950.4981.35311forward
CNT3016767Sesamum indicumZea mays26.1652.7880.95399forward
CNT30605857Sesamum indicumGossypium raimondii47.7489.7778.43728forward
CNT30216750Sesamum indicumKalanchoe fedtschenkoi22.0368.5782.14336forward
CNT30648676Sesamum indicumRosa chinensis42.4386.8578.83647forward
CNT30625703Sesamum indicumDaucus carota36.1350.7880.76551forward
CNT30687113Sesamum indicumTriticum urartu18.6953.5780.35285forward
CNT30476941Sesamum indicumArabidopsis halleri34.8966.4282.14532forward
CNT30366857Sesamum indicumSorghum bicolor25.9740.3380.56396forward
CNT30620207Sesamum indicumCajanus cajan33.7723.9680515forward
CNT30354836Sesamum indicumLactuca sativa16.7944.3783.98256forward
CNT30408809Sesamum indicumPapaver somniferum4884.7279.1732forward
CNT30573870Sesamum indicumVitis vinifera40.3387.2381.63615forward
CNT30705868Sesamum indicumPrunus avium56.6681.3678.36864forward
CNT30642028Sesamum indicumCannabis sativa28.1383.7983.92429forward
CNT3051605Sesamum indicumAmborella trichopoda37.1185.3777.92566forward
CNT30120999Sesamum indicumCitrus clementina66.375.3479.231011forward
CNT3035176Sesamum indicumCucumis melo28.278.1879.77430forward
CNT30330867Sesamum indicumDioscorea rotundata17.5737.0783.96268forward
CNT30149986Sesamum indicumBrachypodium distachyon25.1842.8180.47384forward
CNT30497833Sesamum indicumDigitaria exilis27.9348.380.52426forward

Expression of CNT30616482

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MQDLLGYIQVNWDYMLGKWGYNQGKWGCNQEKWGYNQEMMGCIQERTGCNLEMM*

>peptide 2 (51 aa)
MVRFCIDSSIKQNVHRFLEGASHHRASIIAINPMTSYGHQVTTIGHGIAQYC

>peptide 3 (67 aa)
MTEKLGCMMERWDCKKVRLGCKRVTLGCKRVKWGCKQGMLGCMQGMLGCMQGRLGYSSEMSDCNLEM*

Sequence

>CNT30616482
CTGCAATTTCATAGCAAATGTTAATGAAAAAGAAATTATACAAAACAACTTGCACAAGAAATACAGAGATGCCCATAGCCCCTGAACTTCCCAACTAACG
TCTTTGGCCATTTGGAAAGTTAATTTGACAATGATGATATACTCGAATTAATCAACTTGAAGCCAGATTGGATTATTAGAATCTTGAAGAATAAATAAGG
CCCCTTCTAACTATAAAATGGATTCTCCTTAGAAATCAACTAGCTATATAGTACATTAAAGACTGTTCAGACAATCAATGATGAGAAAAGTTAAGGTGAC
CAAGTTGGAGCATTTCAATTTCTTTTACTCCTAGAGCAAGTTCCACAGAGACTCTCACTGGGAAAATTGACATAATGAATTTACCTGCTTGGGCTATAAC
TTGGACTAGATGGAGAATACGATGGAGATGTTGGAGAATATGAAGGTGAGATCTTTGGACTTGTAGGTGAATATGCAAGAGAAGGGCTGTATCTTGCTGA
AGGATTGTAACTTGGAGATGTAGGGCTATAACTTGGTGAGGTAGGACTGTAACTTGGAGAGGTTGGGCTATAACCAGGGGAGGTCGGGCTGTAGGCAGGT
GAGGTTGGGCTATATGACGGAGAAGTTGGGCTGTATGATGGAGAGGTGGGACTGTAAGAAGGTGAGGTTGGGCTGTAAGAGGGTGACGTTGGGCTGTAAG
AGGGTGAAGTGGGGCTGTAAGCAGGGGATGTTGGGCTGTATGCAGGGGATGTTGGGCTGTATGCAGGGGAGGTTGGGCTATAGCTCGGAGATGTCGGACT
GTAACTTGGAGATGTAGGACTATAACTTGGTGAAGTCGGACTATAGCTAGGAGAAGTTGGGCTGTAGGTTGGAGAAGTAGGTGAGTAGGATGGGCTAGTT
GGAGAATATGCAGGACTTGTTGGGCTATATCCAGGTGAACTGGGACTATATGTTGGGGAAGTGGGGCTATAACCAGGGGAAGTGGGGCTGTAACCAGGAG
AAGTGGGGCTATAACCAGGAGATGATGGGCTGTATCCAGGAGAGGACGGGCTGTAACCTGGAGATGATGTAGGAGAGAAGGCCATTCCACCAACATAAGG
AGAAAACTGGGCATCTGTAACAGGAGATAACCGCAGATTTGGGCTGAGCAAATAACTTGGTGACATCATGCCGTCATGATACGGGGTTCCTGTAAGTGGG
GAACGAGCAGGTGTCATGCCAAATTCCAGGCCACCACCTTCCATGTAACTGGGTAAAGGGATCTCAATAGCTTGTTTTAACATCTCCTCGTTCAGATACA
AGGCGCAGTCTCCAGTGCCAATTGGTGCAAGCTGACCCAACATAATGTTTTCAGTGACACCCCTTAGATGGTCCGTTTCTGCATAGACAGCAGCATCAAG
CAGAATGTCCACCGTTTCCTCGAAGGAGCATCTCATCATCGGGCCAGTATCATTGCGATTAATCCCATGACGAGTTATGGCCATCAAGTGACCACGATAG
GTCATGGTATCGCACAATATTGCCA