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Detailed information on CNT30120999


BLAST search results

BLAST vs Swiss-Prot:
sp|P18616|NRPB1_ARATH, E-value = 2e-125

BLAST vs NONCODE:
NONGMAT000067, E-value = 3e-56

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316024Citrus clementinaCorylus avellana32.4954.1684.4436forward
CNT30616482Citrus clementinaSesamum indicum75.3466.379.231011forward
CNT30628927Citrus clementinaVigna unguiculata29.5870.8981.11397forward
CNT3091732Citrus clementinaSolanum tuberosum47.3255.7579.06635forward
CNT30559586Citrus clementinaActinidia chinensis42.3270.3881.51568forward
CNT3087851Citrus clementinaVigna radiata49.4872.6579.82664forward
CNT30234460Citrus clementinaBrassica oleracea35.2567.2880.55473forward
CNT30263540Citrus clementinaBrassica rapa44.8693.3380.4602forward
CNT30605857Citrus clementinaGossypium raimondii60.2199.6384.53808forward
CNT30625703Citrus clementinaDaucus carota32.6440.3781.28438forward
CNT30620207Citrus clementinaCajanus cajan38.7524.284.04520forward
CNT30354857Citrus clementinaLactuca sativa13.4120.9583.89180forward
CNT30705862Citrus clementinaPrunus avium62.378.7283.49836forward
CNT30176441Citrus clementinaVigna angularis33.4674.2179.73449forward

Expression of CNT30120999

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MIRSPRHRRTSRCHAKLQTFHITRKLKFDGIFQHLIIEIQ*

>peptide 2 (71 aa)
MLGCRKERLGCTMVKWGCMQVRWGYMPVRWGYSLVKLDCNWEKWGCNLERSGCSLGMLGCNLGRLGYSLVK*

Sequence

>CNT30120999
CTGTAATTTGGAGATGTAGGGCTGTACGGACTGGCAGGAGATAATCTTGGACTACTTGGTGAGTAGGCCAGCGACGGACTGTATTTGGCAGACTGAGGAT
TGTAGCTTGGGGATGTAGGACTATAGGTTGGTGAAGTTGGGCTATAACTTGGTGAAGTTGGACTATAACCAGGAGAAGTGGGGCTATAGGCTGGTGAAGT
GGGGCTGTACGATGGAGAAGTGGGGCTGTATGACGGTGAGGTAGGGCTGTACGAAGGTGATGTTGGGCTGTAGGAAGGAGAGGTTGGGCTGTACGATGGT
GAAGTGGGGCTGTATGCAGGTGAGGTGGGGCTATATGCCGGTGAGGTGGGGCTATAGCTTGGTGAAGTTGGACTGTAACTGGGAGAAGTGGGGCTGTAAC
TTGGAGAGGTCGGGCTGTAGCTTGGGGATGTTGGGCTGTAACTTGGGGAGGTTGGGCTATAGCTTGGTGAAGTAGGTGAGTACGATGGACTGGTAGGAGA
ATAGGCAGGACTGGTTGGACTATAACCAGGAGAACTTGGACTATAAGTTGGTGAGGTAGGGCTATATCCAGGCGAGGTGGGACTGTATCCAGGAGATGAC
GGACTGTAGCCTGGTGATGATGGGCTGTATCCAGGTGATGAAGTAGGAGAGAAGGCCATTCCACCAACATAAGGAGAAAACTGGGCATCCGTGACCGGGG
ACAGACGGAGATTTGGGCTAAACAAGTAACCTGGAGACATCATGCCATCATGATAAGGAGTCCCAGACACCGGAGAACGAGCAGGTGTCATGCCAAACTC
CAGACCTTCCATATAACTAGGAAGCTGAAGTTCGATGGCATTTTTCAGCATCTCATCATTGAGATACAATGAACAGTCTCCTGTCCCAATAGGCGCAAGC
TGACCTAACATTATATTCTCAGTGACCCCCCTCAAATAATCTGATTCTGCAAAGACTGCAGCATCAAGAAGAATGTCAACCGTTTCTTCAAATGAACATC
TCATCATTGGTCCAGTATCATTCCTGTTGATGCCATGACGAGTGATGGCCATCAAGTGGCCTCGATAGGTCATCGTATCACAAAGTATAGCCAGATCTTC
ATGACACATAACGGCTAAAAGATTCACACCTTCAGTATCCAGCATCCACTCATCTTCCGACTTAAATCCTTCATTATCATCATATTTGGTTGTTTTACCC
TTTTTAATAAACACCTTGTTGATATCAGGGATACCTCGAAGAGCCATTTCTGTCAGCATGTTACTCTCAATCTTCTTCAAGAAAACATCATCTTCAGCTG
ATTCATCATTCAATTCTCCCTTTGGAGCTTCATCATTCATTA