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Detailed information on CNT30476898


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30379051Arabidopsis halleriManihot esculenta79.8352.7280.43368forward
CNT30554721Arabidopsis halleriOryza glaberrima74.6236.7981.69344forward
CNT30141877Arabidopsis halleriLolium perenne55.7557.3782.1257forward
CNT30605857Arabidopsis halleriGossypium raimondii77.2243.983.43356forward
CNT3067990Arabidopsis halleriLeersia perrieri72.0287.1481.93332forward
CNT30596736Arabidopsis halleriOryza meridionalis52.4932.0582.64242forward
CNT30370935Arabidopsis halleriOryza glumipatula55.7526.5582.88257forward
CNT30121168Arabidopsis halleriCitrus clementina74.6232.3983.72344forward
CNT30551544Arabidopsis halleriOryza brachyantha69.8546.3381.37322forward

Expression of CNT30476898

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MLGCKMVKLGCKKERLGCMLVKSGYMQAKSGCNLGT*

Sequence

>CNT30476898
GGAGAGTAAGCTATAGATGGGCTATATTTAGCAGACTGAGGGTTGTAGCTTGGAGACGTAGGACCATAGCTTGGTGATGTTGGACTGTAACTTGGTGAAG
TAGGGCTGTAGCCAGGAGATGTGGGGCTATATGCGGGTGAAGTAGGACTGTAAGACGGTGATGTGGGACTGTATGATGGTGAAGTAGGGCTGTAAGAAGG
CGATGTTGGGCTGTAAGATGGTGAAGTTGGGCTGTAAGAAGGAGAGGTTGGGCTGTATGCTGGTGAAGTCGGGCTATATGCAGGCGAAGTCGGGCTGTAA
CTTGGGGACGTAGGACTGTAGCTTGGAGATGTAGGGCTGTAGCTTGGCGACGTAGGGCTATAGCTTGGAGACGTAGGGCTATAGCTCGGAGACGTAGGAG
AATAGGAAGGACTTGTAGGAGAATAAGCAGGGCTTGTTGGGCTATAGCCAGGAGAACTGGG