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Detailed information on CNT3016767


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000067, E-value = 2e-49

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523577Zea maysSetaria italica61.3874.9689.01464forward
CNT30536082Zea maysEucalyptus grandis52.6567.2380.4398forward
CNT30516792Zea maysJuglans regia59.3950.4581.07449forward
CNT30500604Zea maysCoffea canephora36.6445.0480.87277forward
CNT30616482Zea maysSesamum indicum52.7826.1680.95399forward
CNT30269263Zea maysChenopodium quinoa58.9958.5381.84446forward
CNT30727661Zea maysCorchorus capsularis53.1764.2279.6402forward
CNT30378908Zea maysManihot esculenta45.936.7680.69347forward
CNT30710467Zea maysGlycine max34.3935.9683.85260forward
CNT30400271Zea maysTriticum turgidum57.6788.0884.17436forward
CNT30591858Zea maysMusa acuminata34.7951.8780.99263forward
CNT30234460Zea maysBrassica oleracea45.548.9380.81344forward
CNT30554721Zea maysOryza glaberrima61.3849.6381.9464forward
CNT30442780Zea maysAegilops tauschii61.5158.6483.44465forward
CNT30668234Zea maysTriticum dicoccoides22.3528.7487.57169forward
CNT30312353Zea maysCamelina sativa29.2353.984.16221forward
CNT3079663Zea maysBrassica juncea45.564.6681.69344forward
CNT30263848Zea maysBrassica rapa38.3668.5680.69290forward
CNT30468674Zea maysSaccharum spontaneum86.5171.3291.28654forward
CNT30141877Zea maysLolium perenne56.4895.3182.2427forward
CNT30605857Zea maysGossypium raimondii45.1142.0581.82341forward
CNT3067990Zea maysLeersia perrieri47.0993.4480.9356forward
CNT30205386Zea maysHelianthus annuus43.5246.0182.67329forward
CNT30625547Zea maysDaucus carota40.3429.3880.98305forward
CNT30688162Zea maysTriticum urartu61.2468.983.15463forward
CNT30350933Zea maysEragrostis tef57.9455.9482.65438forward
CNT30366537Zea maysSorghum bicolor102.7889.1189.19777forward
CNT30620207Zea maysCajanus cajan31.2210.9881.36236forward
CNT30154777Zea maysPrunus persica52.6549.7580.9398forward
CNT30574023Zea maysVitis vinifera54.6374.2880.15413forward
CNT30705862Zea maysPrunus avium44.0531.3680.48333forward
CNT30642025Zea maysCannabis sativa55.4281.6879.47419forward
CNT3028162Zea maysTheobroma cacao29.6339.9386.16224forward
CNT3051702Zea maysAmborella trichopoda35.1943.4681.2266forward
CNT30121049Zea maysCitrus clementina53.1737.1581.09402forward
CNT30103173Zea maysOryza rufipogon53.5741.7182.72405forward
CNT30584450Zea maysEchinochloa crusgalli98.9499.8787.17748forward
CNT30497833Zea maysDigitaria exilis99.0784.9288.79749forward
CNT30551544Zea maysOryza brachyantha55.0359.8682.93416forward
CNT30335475Zea maysCynara cardunculus37.4321.7983.39283forward

Expression of CNT3016767

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MGCIPLTMGSNHLVKGMVRMPCAQHTARTKHLY*

>peptide 2 (38 aa)
MVKLDCRMAMWGCKRVMWGCMLVRLGYKLVRWGCSLVM*

Sequence

>CNT3016767
TATGGACTCATCCTGGGGCTGCTTGGAGAGTATGCATGTGAAGGGCTGTACTTGGCTGATGAAGGATTGTAGCTCGGAGATGTAGGACTGTAGCTCGGAG
ATGTAGGGCTGTAGCTCGGTGACGTTGGGCTGTATCCTGGTGATGTCGGGCTGTAAGCAGGTGATGTCGGGCTGTAGGAGGGAGAGGTAGGGCTGTATGA
AGGGGACGTAGGGCTGTATGAAGGTGATGTAGGGCTATAAGATGGTGAAGTTGGACTGTAGGATGGCGATGTGGGGCTGTAAGCGGGTGATGTGGGGCTG
TATGCTGGTGAGGTTGGGCTATAAACTGGTGAGGTGGGGCTGTAGCTTGGTGATGTAGGACTATAGCTAGGAGATGTAGGGCTGTAGCTTGGTGATGTAG
GGCTGTAGCTTGGTGATGTTGGGCTGTAGCTCGGAGATGTGGGTGAGTACGATGGGCTGGTAGGCGAGTACGTCGGGCTGGTTGGGGAGTAATTCGGGCT
TGTTGGACTGTAGGTGGGAGAGCCAGGAGTGTAAGACGGTGAGGTGGGACTATAGCTTGGTGATGCAGGGCTATATGATGGAGAGAGAGGGCTATATCCT
TTCTCTGGGGTGAAAACCGGAGAAGATGGGCTGTATCCCCCTGACGATGGGGAGTAACCACCTGGTGAAGGGAATGGTGAGAATGCCATGTGCCCAACAT
ACGGCGAGAACGAAGCATCTGTATTAATAGGCGAAGCCCTGATGTTTGGACTCAGC