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Detailed information on CNT30554721


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSLYT000794, E-value = 1e-39

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30536082Oryza glaberrimaEucalyptus grandis32.9452.0380.84308forward
CNT30549166Oryza glaberrimaIpomoea triloba26.8437.3582.47251forward
CNT30516792Oryza glaberrimaJuglans regia39.3641.3580.43368forward
CNT30376158Oryza glaberrimaArabidopsis thaliana36.7938.4880.52344forward
CNT3021339Oryza glaberrimaCitrullus lanatus41.2860.8879.27386forward
CNT30727660Oryza glaberrimaCorchorus capsularis34.8759.682.52326forward
CNT30378908Oryza glaberrimaManihot esculenta36.4736.1280.06341forward
CNT30710467Oryza glaberrimaGlycine max33.0542.7482.2309forward
CNT3042435Oryza glaberrimaPrunus dulcis40.2154.3480.05376forward
CNT3091613Oryza glaberrimaSolanum tuberosum38.0747.0980.34356forward
CNT30559890Oryza glaberrimaActinidia chinensis36.950.5180.87345forward
CNT30234460Oryza glaberrimaBrassica oleracea37.1149.3681.84347forward
CNT30508904Oryza glaberrimaSolanum lycopersicum38.0757.6181.46356forward
CNT30442780Oryza glaberrimaAegilops tauschii77.5491.4284725forward
CNT30668234Oryza glaberrimaTriticum dicoccoides48.7777.5583.99456forward
CNT3076593Oryza glaberrimaBrassica juncea31.7654.482.15297forward
CNT30263848Oryza glaberrimaBrassica rapa32.6272.182.62305forward
CNT3016767Oryza glaberrimaZea mays49.6361.3881.9464forward
CNT30605857Oryza glaberrimaGossypium raimondii39.6845.7582.21371forward
CNT3067979Oryza glaberrimaLeersia perrieri38.499.7291.36359forward
CNT30688162Oryza glaberrimaTriticum urartu65.7891.5285.69615forward
CNT30350932Oryza glaberrimaEragrostis tef45.2494.6387.47423forward
CNT30476898Oryza glaberrimaArabidopsis halleri36.7974.6281.69344forward
CNT30354623Oryza glaberrimaLactuca sativa32.347.1180.13302forward
CNT30154777Oryza glaberrimaPrunus persica40.214780.05376forward
CNT30408809Oryza glaberrimaPapaver somniferum50.5954.7578.44473forward
CNT30573870Oryza glaberrimaVitis vinifera41.655.1879.95389forward
CNT30705868Oryza glaberrimaPrunus avium35.0830.8979.88328forward
CNT30642025Oryza glaberrimaCannabis sativa27.8150.6881.92260forward
CNT3027877Oryza glaberrimaTheobroma cacao29.4169.6281.82275forward
CNT30121049Oryza glaberrimaCitrus clementina42.9937.1580.1402forward
CNT3035176Oryza glaberrimaCucumis melo36.5862.1879.82342forward
CNT30150463Oryza glaberrimaBrachypodium distachyon80.3285.4484.29751forward
CNT30498009Oryza glaberrimaDigitaria exilis102.4697.8582.57958forward
CNT30551544Oryza glaberrimaOryza brachyantha76.58103.0288.41716forward

Expression of CNT30554721

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MIWCPRDGRACWCHAKVQAFNIAWELKFDGLLQHLIIEIQCTASCTDRCKL

>peptide 2 (56 aa)
CNLVKSDYKGSALGCLESTRGKDCTWPKKDCSLVKLDCNLVKLGCSLEMSGCNQVM*

>peptide 3 (81 aa)
MQEMSDCMRVMSDCMRGKWGCKTEMLDCMMEMLGYMMVMWGCKMEKLDYMQEKSDYKLVMSDCSSEKWDYNLARSGCNLEM*

>peptide 4 (35 aa)
MVSQRWASVLVSCQSPGLQHSLGVEVRWPAAASDH*

>peptide 5 (37 aa)
MMEKWDCSWVKQDYMMEKLGCILALDCIPEKMDCNHP*

Sequence

>CNT30554721
CTGTAATTTGGTGAAGTCTGACTATAAGGGCTCAGCCTTGGGCTGCTTGGAGAGTACGCGTGGGAAGGACTGTACTTGGCCGAAGAAGGATTGTAGCTTG
GTGAAGTTGGACTGTAATTTGGTGAAGTTGGGCTGTAGCTTGGAGATGTCGGGCTGTAACCAGGTGATGTAGGGCTGTATGCAGGAGATGTCGGACTGTA
TGAGGGTGATGTCGGACTGTATGAGGGGGAAGTGGGGCTGTAAGACGGAGATGTTGGACTGTATGATGGAGATGTTGGGCTATATGATGGTGATGTGGGG
CTGTAAGATGGAGAAGTTGGACTATATGCAGGAGAAGTCGGACTATAAACTGGTGATGTCGGACTGTAGCTCGGAGAAGTGGGACTATAACTTGGCGAGG
TCGGGCTGTAACTTGGAGATGTAGGGCTATAGCTAGGTGATGTAGGGCTGTAGCTTGGAGATGTTGGCGAGTATGATGGACTGGTAGGTGAGTATGATGG
ACTTGTTGGCGAGTAAGTAGGAGAGCCAGGTGTATATGATGGAGAAGTGGGACTGTAGCTGGGTGAAGCAGGACTATATGATGGAGAAGTTGGGCTGTAT
CCTGGCCCTGGACTGTATACCGGAGAAGATGGACTGTAACCACCCCTGACGATGGAGTGTAGCCTGGTGAAGGTACTGGTGAGAAAGCCATTCCTCCAAC
ATATGGCGAGAACTGAGCATCTGTAATGGGGGAAGCCCTGATGTTTGGACTTAGCAGGTAGCTCGGTGACATCATTCCTTCATGATATGGTGTCCCAGAG
ATGGGCGAGCGTGCTGGTGTCATGCCAAAGTCCAGGCCTTCAACATAGCTTGGGAGTTGAAGTTCGATGGCCTGCTGCAGCATCTGATCATTGAGATACA
ATGCACAGCCTCCTGTACCGATAGGTGCAAGCTGG