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Detailed information on CNT3067979

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30536042	Leersia perrieri	Eucalyptus grandis	44.72	29.27	83.85	161	forward
CNT30549166	Leersia perrieri	Ipomoea triloba	58.06	31.1	83.25	209	forward
CNT3021339	Leersia perrieri	Citrullus lanatus	93.89	53.31	81.07	338	forward
CNT30727660	Leersia perrieri	Corchorus capsularis	98.06	64.53	80.74	353	forward
CNT30378908	Leersia perrieri	Manihot esculenta	95.28	36.33	80.47	343	forward
CNT30628927	Leersia perrieri	Vigna unguiculata	77.22	49.64	80.94	278	forward
CNT30490956	Leersia perrieri	Olea europaea	48.89	41.9	82.39	176	forward
CNT30710467	Leersia perrieri	Glycine max	83.33	41.49	81	300	forward
CNT3042435	Leersia perrieri	Prunus dulcis	81.67	42.49	81.63	294	forward
CNT3091361	Leersia perrieri	Solanum tuberosum	64.72	31.7	80.69	233	forward
CNT30559890	Leersia perrieri	Actinidia chinensis	90.56	47.73	82.52	326	forward
CNT30235097	Leersia perrieri	Brassica oleracea	78.89	35.46	80.99	284	forward
CNT30554721	Leersia perrieri	Oryza glaberrima	99.72	38.4	91.36	359	forward
CNT30145737	Leersia perrieri	Medicago truncatula	40.56	23.7	85.62	146	forward
CNT30442780	Leersia perrieri	Aegilops tauschii	98.61	44.77	83.94	355	forward
CNT30311681	Leersia perrieri	Camelina sativa	63.06	31.62	81.06	227	forward
CNT30605857	Leersia perrieri	Gossypium raimondii	88.89	39.46	83.75	320	forward
CNT30625502	Leersia perrieri	Daucus carota	39.72	17.57	82.52	143	forward
CNT30688162	Leersia perrieri	Triticum urartu	98.06	52.53	83.85	353	forward
CNT30350932	Leersia perrieri	Eragrostis tef	99.72	80.31	87.74	359	forward
CNT30620207	Leersia perrieri	Cajanus cajan	48.06	8.05	83.82	173	forward
CNT30154777	Leersia perrieri	Prunus persica	81.67	36.75	81.29	294	forward
CNT30410012	Leersia perrieri	Papaver somniferum	42.22	40	84.87	152	forward
CNT30574166	Leersia perrieri	Vitis vinifera	83.06	69.7	79.6	299	forward
CNT30705862	Leersia perrieri	Prunus avium	89.44	30.32	80.75	322	forward
CNT30641843	Leersia perrieri	Cannabis sativa	78.06	58.42	80.78	281	forward
CNT3051702	Leersia perrieri	Amborella trichopoda	78.89	46.41	78.87	284	forward
CNT3035176	Leersia perrieri	Cucumis melo	86.67	56.73	80.13	312	forward
CNT30330867	Leersia perrieri	Dioscorea rotundata	69.72	34.72	81.27	251	forward
CNT30150463	Leersia perrieri	Brachypodium distachyon	93.89	38.45	86.09	338	forward
CNT30577473	Leersia perrieri	Oryza barthii	61.39	40.55	89.14	221	forward
CNT30498009	Leersia perrieri	Digitaria exilis	98.89	36.36	85.11	356	forward

Expression of CNT3067979

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MQAMLGCMRVMLDCKKGRWGCMRETSDCMMEMLGYMTAMLGCMTVKLGYMQEN*

Sequence

>CNT3067979
GGTTGGACTGTAGTTTGGCGAAGTTGGGCTGTAGCTTGGTGATGTCGGGCTGTACCCAGGAGAAGTAGGGCTGTATGCAGGCGATGTTGGGCTGTATGAG
GGTGATGTTGGACTGTAAGAAGGGGAGGTGGGGCTGTATGAGGGAGACGTCGGACTGTATGATGGAGATGTTGGGCTATATGACGGCGATGTTGGGCTGT
ATGACGGTGAAGTTGGGCTATATGCAGGAGAATTAGGACTATAAACTGGTGATGTGGGACTGTAGCTCGGAGAAGTGGGACTATAACTTGGCGAGGTGGG
GCTGTAACTTGGTGATGTAGGACTATAGCTAGGAGATGTAGGGCTGTAGCTTGGAGATGT