« Back to Populus trichocarpa search


Detailed information on CNT3025891


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LDQ7|METK_CAMSI, E-value = 8e-73

BLAST vs NONCODE:
NONPOPT000587, E-value = 1e-63

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30698521Populus trichocarpaQuercus lobata34.447.7785.82268forward
CNT30618114Populus trichocarpaSesamum indicum29.1450.2284.14227forward
CNT30194995Populus trichocarpaPisum sativum26.0621.3285.22203forward
CNT30181754Populus trichocarpaSecale cereale37.2346.183.1290forward
CNT30294498Populus trichocarpaTriticum aestivum49.1747.9384.33383forward
CNT30225924Populus trichocarpaHordeum vulgare47.6365.983.02371forward
CNT30437887Populus trichocarpaAegilops tauschii48.9154.4384.25381forward
CNT30667060Populus trichocarpaTriticum dicoccoides44.4254.4981.5346forward
CNT30218287Populus trichocarpaKalanchoe fedtschenkoi52.3778.6183.82408forward
CNT30681758Populus trichocarpaTriticum urartu41.4647.3683.9323forward
CNT30477100Populus trichocarpaArabidopsis halleri31.4562.0379.59245forward
CNT30368062Populus trichocarpaSorghum bicolor47.2433.4884.51368forward
CNT30496713Populus trichocarpaDigitaria exilis39.9220.6582.96311forward
CNT30594307Populus trichocarpaEragrostis curvula9.1120.2388.7371forward

Expression of CNT3025891

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MGSPATVGVNNDLASSETCITMRATNNKTARWV*

>peptide 2 (40 aa)
LPRASLTGICYFHCRKFNQNYHTFSHHRHWGKKRRKKKPK*

Sequence

>CNT3025891
GCTACCTCGTGCAAGCTTAACAGGCATTTGTTACTTCCATTGCCGTAAATTCAACCAAAATTATCACACTTTTTCACACCACCGACACTGGGGAAAAAAA
AGACGGAAAAAAAAACCCAAATAGTAAAAGAAAGGAAAATGAATAGGGAGGGTATCGTAGTGTAGACCATGGCAGATTGCTATTGATTATAGACCAGCAG
CAAGAAAACAAGTCAAATTATTCATCAAGGACCAATAAAACAGGCATCGAACTAAAGGGATATTATAAATCACTCAAGCTTGGGGCTTCTCCCATTTGAG
GGGCTTGACAACCTCCCAGGTGAAGTCTGGGTCATCCCTTCCAAAATGTCCGTATGCGGCTGTCTTCAAGAACCTATTGCCACCCCTCTTGAGATCCAGG
CCTAAAGTCAAAGTTCTCCTTCACAATCTTAAGGATCTCCTTGTCAGGAATTTTTCCAGTGCCATAGGTGTCCACAAAGACAGACAAAGGCTCGGGTACA
CCAATAGCATAGGAGACTTGCACAATGCACCTACGAGCAAGACCATTTGCTACGATGCTCTTGGCAGCCTGCCTAACAATGTAAGCACCACTTCTATCCA
CCTTAGTTGGGTCCTTCCCTGAGAAAGCACCACCACCATGGGCTCCCCAGCCACCGTAGGTGTCAATAATGATCTTGCGTCCAGTGAGACCTGCATCACC
ATGAGGGCCACCAATAACAAAACGGCCAGATGGGTTTAGGTGGAAGATAGTTTTCTCATCAAGGTACTTCTCAGGGATG