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Detailed information on CNT30372848


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30317272Arabidopsis thalianaCorylus avellana20.6731.8887.1124forward
CNT30296001Arabidopsis thalianaTriticum aestivum1928.5792.11114forward
CNT30383102Arabidopsis thalianaTriticum turgidum23.8348.8189.51143forward
CNT30562914Arabidopsis thalianaActinidia chinensis16.8333.2283.17101forward
CNT3079816Arabidopsis thalianaBrassica juncea20.8345.4597.6125forward
CNT30135921Arabidopsis thalianaLolium perenne16.6726.690100forward
CNT3065Arabidopsis thalianaZea mays22.8356.1589.05137forward
CNT30609153Arabidopsis thalianaGossypium raimondii19.8329.3887.39119forward
CNT30648424Arabidopsis thalianaRosa chinensis16.8331.4689.11101forward
CNT30129276Arabidopsis thalianaCorymbia citriodora14.8321.2987.6489forward
CNT30716286Arabidopsis thalianaMalus domestica golden23.8310.9584.62143forward
CNT30719750Arabidopsis thalianaTriticum spelta23.8360.0889.51143forward
CNT30361585Arabidopsis thalianaSorghum bicolor18.6729.8790.18112forward
CNT30359416Arabidopsis thalianaLactuca sativa2319.383.33138forward
CNT3024647Arabidopsis thalianaPopulus trichocarpa21.3324.7188.28128forward
CNT30331462Arabidopsis thalianaDioscorea rotundata19.8323.1587.39119forward
CNT30100745Arabidopsis thalianaOryza rufipogon20.3310.5990.98122forward
CNT30575848Arabidopsis thalianaOryza barthii20.3313.5790.98122forward
CNT30579614Arabidopsis thalianaEchinochloa crusgalli20.1730.6390.91121forward
CNT30117821Arabidopsis thalianaOryza nivara23.8312.8988.81143forward

Expression of CNT30372848

Peptides detected in this lncRNA

>peptide 1 (70 aa)
TSSITVGSRSTKTARGTCFPAPVSLKKVLKASSPPPTVLSLGIWPSGCNIPHPRQHINTKRHIKRKDLHI*

>peptide 2 (47 aa)
LIDHSWLKINKDSTWDVLPCTGLTEEGVESIVTSANSLVTRHLAIRL*

Sequence

>CNT30372848
ACCTCATCGATCACAGTTGGCTCAAGATCAACAAAGACAGCACGTGGGACGTGCTTCCCTGCACCGGTCTCACTGAAGAAGGTGTTGAAAGCATCGTCAC
CTCCGCCAACAGTCTTGTCACTCGGCATCTGGCCATCAGGCTGTAACATTCCACATCCAAGACAACACATCAATACAAAGAGACATATAAAACGAAAAGA
TCTACACATATAGAAGCAACGATGAAAAGAGAAAATCACAACGAGATGCTTCAACTATATCGCAAATATCAATCGCCATCTCTTTAAGCAAATAAAGCAA
AGTTTTCCTTCACCCAATATTATAAAACAAATACGGATATGGCATCAGCAAAAGCAATCTGACATGAAATCCAATTCAAACACAGATCTATCCAGGTTCA
TCGAATAATTTAGAAATGAGAAACGGATTTCGCATCAACCACAGAAATTTCATAAGACGTCGAAATCAAACACAGATCTAAACGATTACGTAAAATAGAT
CTACGAGGTCAATGCTGCGCAAAAATATCTCAGATTTGATCTTTTAAAATACGAAAAATATGAAGAAAAACACAGATCAAGATAGAAGAGGAAGAGACGA