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Detailed information on CNT30727923


BLAST search results

BLAST vs Swiss-Prot:
sp|P33632|TBB3_ANEPH, E-value = 2e-22

BLAST vs NONCODE:
NONGMAT000220, E-value = 1e-82

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678300Corchorus capsularisSetaria viridis43.3352.8386.16513forward
CNT30522101Corchorus capsularisSetaria italica35.4739.6285.71420forward
CNT30640127Corchorus capsularisNymphaea colorata23.1434.3489.78274forward
CNT30517675Corchorus capsularisJuglans regia21.1141.3989.2250forward
CNT30371538Corchorus capsularisArabidopsis thaliana34.8886.9588.14413forward
CNT30379228Corchorus capsularisManihot esculenta37.9251.4990.2449forward
CNT30403515Corchorus capsularisBeta vulgaris20.5294.5590.12243forward
CNT30284381Corchorus capsularisTriticum aestivum38.659.8288.4457forward
CNT30224141Corchorus capsularisHordeum vulgare28.725082.65340forward
CNT30391523Corchorus capsularisTriticum turgidum37.0859.5786.79439forward
CNT30237104Corchorus capsularisBrassica oleracea9.1233.3393.52108forward
CNT30555279Corchorus capsularisOryza glaberrima21.3781.0984.98253forward
CNT30144939Corchorus capsularisMedicago truncatula18.924687.5224forward
CNT30247087Corchorus capsularisAvena sativa36.2358.6188.34429forward
CNT30655883Corchorus capsularisTriticum dicoccoides38.7764.2988.24459forward
CNT3059767Corchorus capsularisArabidopsis lyrata20.133.5788.24238forward
CNT3075316Corchorus capsularisBrassica juncea22.388.8988.64264forward
CNT30265526Corchorus capsularisBrassica rapa66.9879.8684.74793forward
CNT30606894Corchorus capsularisGossypium raimondii27.5389.3293.56326forward
CNT30229012Corchorus capsularisAnanas comosus20.8629.7987.04247forward
CNT30716286Corchorus capsularisMalus domestica golden29.3926.6587.93348forward
CNT30689745Corchorus capsularisTriticum urartu38.6860.188.43458forward
CNT30721658Corchorus capsularisTriticum spelta17.6550.3686.12209forward
CNT30361562Corchorus capsularisSorghum bicolor38.9446.6185.47461forward
CNT30619808Corchorus capsularisCajanus cajan14.128.0787.43167forward
CNT30597159Corchorus capsularisOryza meridionalis17.5728.7386.54208forward
CNT30371316Corchorus capsularisOryza glumipatula27.1127.284.74321forward
CNT30430260Corchorus capsularisPapaver somniferum19.173989.43227forward
CNT3024647Corchorus capsularisPopulus trichocarpa27.6263.1390.83327forward
CNT30331462Corchorus capsularisDioscorea rotundata15.6235.9984.32185forward
CNT30147962Corchorus capsularisBrachypodium distachyon17.1559.8886.21203forward
CNT30575645Corchorus capsularisOryza barthii28.2139.3986.23334forward
CNT30726419Corchorus capsularisLupinus angustifolius66.9877.988.02793forward
CNT3040082Corchorus capsularisMarchantia polymorpha23.4866.1980.94278forward

Expression of CNT30727923

Peptides detected in this lncRNA

>peptide 1 (40 aa)
GFSEGTIPKRIIGTSTSQFSNKKVIRGQGWVLKNWGQNMP*

>peptide 2 (34 aa)
MRENTSATLVELEIMQTALWTLARSPPGTTVGGW*

>peptide 3 (50 aa)
MVRLVLMVATAALTSLGTTSPRYIKQQAMYLPWRGSHLAIIDEGSKALLV*

Sequence

>CNT30727923
TGGGATTTTCTGAGGGCACCATCCCTAAACGTATTATTGGTACTAGTACTTCGCAATTCTCAAACAAAAAGGTAATTCGAGGTCAGGGCTGGGTTTTAAA
GAACTGGGGCCAAAATATGCCATGATCATTTGAAGAAGCCAAGGCCCACAAACGCATATTGGAATCACAAATACAAATTGTCAACAATTAAACGATAGCA
TAGAATACCAAAAGAGTATTTCTTTAACAGAAGTCTTCAACAAGCTTTGAAACGGAGATAAGAATCAAAGCTGACAACATACAGAAGCAAACATAAAAAC
GAAAGGGACAACAATTCATCGGCTCACAAACTGCAAGAAGCCCTCAAGTCAAACATATATCTAGTACTCCTCGTCACCATCATCCTCACCCTCAGCTGAC
TCAGCACCAACTTCTTCATAATCCTTCTCAAGTGCAGCAAGATCCTCACGAGCCTCAGAGAATTCACCTTCTTCCATACCCTCACCCACGTACCAGTGAA
CAAAGGCACGCTTGCAGTACATAAGATCAAACTTGTGGTCAATGCGGGAGAACACCTCAGCCACACTGGTAGAGTTGGAAATCATGCAAACAGCCCTTTG
GACCTTGGCGAGGTCACCACCAGGAACAACAGTGGGTGGCTGGTAGTTGATACCACACTTGAATCCAGTTGGGCACCAGTCAACAAATTGGATGGTACGT
TTGGTCTTGATGGTGGCAACTGCAGCATTGACATCCTTAGGCACAACATCACCACGGTACATCAAACAGCAAGCCATGTACTTGCCATGGCGAGGATCAC
ACTTAGCCATCATAGATGAAGGCTCAAAGGCACTGTTGGTGTAGGTGGGTCGCTCAATGTCAAGAGAACGCCTGCAGATGTCATAGATAGCCTCATTGTC
GAGGAGAACAGCCACATCAGTGTGTTCCAAAAGGGAGTGAGTTGAGAGAACACTATTGTAGGGCTCAACAACAGAGGTGGAGACCTGGGGAGAGGGGTAG
ACAGTGAAACCCAACTTGGATTTCTTGCCATAGTCAACAGACAAACGCTCCAACAGAAGAGAACCAAGACCAGATCCAGTTCCTCCACCAACAGCGTTGA
AAACAAGGAACCCTTGGAGACCAGTGCAGTTATCAGCAAGCTTCCTGATACGGTCCAAGCAGAGATCAACAATTTCCTTGCCAA