Detailed information on CNT30712809


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6VAG0|TBA2_GOSHI, E-value = 9e-58

BLAST vs NONCODE:
NONGMAT000220, E-value = 2e-140

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678671Glycine maxSetaria viridis97.0140.0785.23325forward
CNT30521842Glycine maxSetaria italica97.6135.4385.02327forward
CNT30517675Glycine maxJuglans regia68.0637.7588.6228forward
CNT3021397Glycine maxCitrullus lanatus25.6712.9984.8886forward
CNT3071006Glycine maxQuercus suber87.1660.4681.85292forward
CNT30403515Glycine maxBeta vulgaris64.1883.6687.44215forward
CNT30296175Glycine maxTriticum aestivum62.6971.9287.14210forward
CNT30220716Glycine maxHordeum vulgare29.5543.4286.8799forward
CNT30391993Glycine maxTriticum turgidum62.6988.2487.14210forward
CNT30555279Glycine maxOryza glaberrima74.9380.4585.66251forward
CNT30435344Glycine maxAegilops tauschii44.1847.5985.81148forward
CNT3075301Glycine maxBrassica juncea87.4655.1882.25293forward
CNT30136247Glycine maxLolium perenne44.1848.3785.81148forward
CNT3010240Glycine maxZea mays91.0432.5284.92305forward
CNT30606894Glycine maxGossypium raimondii99.190.9683.73332forward
CNT30229091Glycine maxAnanas comosus41.4938.8379.86139forward
CNT30716299Glycine maxMalus domestica golden10055.1985.67335forward
CNT30683531Glycine maxTriticum urartu43.8847.8888.44147forward
CNT30721349Glycine maxTriticum spelta43.884988.44147forward
CNT30362155Glycine maxSorghum bicolor90.1527.6886.75302forward
CNT30596030Glycine maxOryza meridionalis44.4862.0886.58149forward
CNT30356256Glycine maxLactuca sativa66.2742.8680.18222forward
CNT30371316Glycine maxOryza glumipatula97.3127.6385.28326forward
CNT3024647Glycine maxPopulus trichocarpa98.5163.7183.94330forward
CNT30331462Glycine maxDioscorea rotundata57.9137.7482.99194forward
CNT30104015Glycine maxOryza rufipogon53.7314.988.33180forward
CNT30726253Glycine maxLupinus angustifolius98.2190.3887.54329forward

Expression of CNT30712809

Peptides detected in this lncRNA

>peptide 1 (64 aa)
AVEVGVGGTLNVERASADVINGFIVQEDSNIGVLQERMGGEDTVVWLNNRGGHLRRGVDCETKL*

>peptide 2 (33 aa)
MASLSKRTATSVCSKREWVERTLLYGSTTEVDT*

Sequence

>CNT30712809
AGGCGGTTGAGGTTGGTGTAGGTGGGACGCTCAATGTCGAGAGAGCGTCTGCAGATGTCATAAATGGCTTCATTGTCCAAGAGGACAGCAACATCGGTGT
GCTCCAAGAGAGAATGGGTGGAGAGGACACTGTTGTATGGCTCAACAACAGAGGTGGACACCTGAGGAGAGGGGTAGACTGTGAAACCAAGCTTTGATTT
CTTGCCATAATCAACGGAGAGACGCTCCAAGAGAAGGGAACCAAGTCCAGAACCAGTTCCTCCACCAACGGCATTGAAGACCAAAAACCCTTGGAGTCCA
GTGCAATTGTCAGCAAGCTTTCTGATGCGGTCCAA