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Detailed information on CNT30391993


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6VAG0|TBA2_GOSHI, E-value = 3e-45

BLAST vs NONCODE:
NONGMAT000220, E-value = 1e-54

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694759Triticum turgidumOryza sativa91.1843.6685.25217forward
CNT30522212Triticum turgidumSetaria italica10097.9493.28238forward
CNT3071006Triticum turgidumQuercus suber81.9340.3783.59195forward
CNT30712809Triticum turgidumGlycine max88.2462.6987.14210forward
CNT30296175Triticum turgidumTriticum aestivum10081.51100238forward
CNT30606894Triticum turgidumGossypium raimondii85.7155.8985.29204forward
CNT30229091Triticum turgidumAnanas comosus55.4636.8781.82132forward
CNT30655223Triticum turgidumRosa chinensis72.6968.1183.24173forward
CNT30716286Triticum turgidumMalus domestica golden88.6616.1686.73211forward
CNT30106559Triticum turgidumOryza longistaminata28.1529.9194.0367forward
CNT3024647Triticum turgidumPopulus trichocarpa90.7641.784.26216forward
CNT30331462Triticum turgidumDioscorea rotundata81.5137.7484.02194forward
CNT30174517Triticum turgidumVigna angularis67.6580.181.99161forward
CNT30726253Triticum turgidumLupinus angustifolius88.2457.6986.19210forward
CNT3040082Triticum turgidumMarchantia polymorpha92.8652.6283.71221forward

Expression of CNT30391993

Peptides detected in this lncRNA

>peptide 1 (77 aa)
RNEPVEVGVCWALNVKGAAADVIDGLIVKEDSHISVLKERVGGQDTVVWLDNRGGDLRGWVHCEPKLGLLSIVNNLLA

>peptide 2 (33 aa)
MASLSRRTATSVCSRREWVDRTLLYGSTTEVET*

>peptide 3 (54 aa)
MLGAQCQGSGGRCHRWPHCQGGQPHQCAQGESGWTGHCCMARQQRWRPEGMGTL*

Sequence

>CNT30391993
TGAGAAACGAGCCTGTTGAGGTTGGTGTATGTTGGGCGCTCAATGTCAAGGGAGCGGCGGCAGATGTCATAGATGGCCTCATTGTCAAGGAGGACAGCCA
CATCAGTGTGCTCAAGGAGAGAGTGGGTGGACAGGACACTGTTGTATGGCTCGACAACAGAGGTGGAGACCTGAGGGGATGGGTACACTGTGAACCCAAG
CTTGGACTTCTTTCCATAGTCAACAATCTCCTTGCCAA