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Detailed information on CNT30609153


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FT36|TBA_DAUCA, E-value = 1e-73

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677979Gossypium raimondiiSetaria viridis45.6819.4985.41185forward
CNT30522084Gossypium raimondiiSetaria italica22.7230.1689.1392forward
CNT30317272Gossypium raimondiiCorylus avellana47.949.8787.11194forward
CNT30372848Gossypium raimondiiArabidopsis thaliana29.3819.8387.39119forward
CNT30729860Gossypium raimondiiCorchorus capsularis74.5732.6592.05302forward
CNT30493173Gossypium raimondiiOlea europaea27.1626.6381.82110forward
CNT30383102Gossypium raimondiiTriticum turgidum39.5154.6184.38160forward
CNT30562914Gossypium raimondiiActinidia chinensis44.258.8882.12179forward
CNT30555317Gossypium raimondiiOryza glaberrima24.9435.3186.14101forward
CNT30611949Gossypium raimondiiArabis alpina58.5268.582.7237forward
CNT30135921Gossypium raimondiiLolium perenne45.4348.9486.41184forward
CNT3065Gossypium raimondiiZea mays41.2368.4486.23167forward
CNT30648424Gossypium raimondiiRosa chinensis48.1560.7584.62195forward
CNT30129276Gossypium raimondiiCorymbia citriodora43.4642.1187.5176forward
CNT30719750Gossypium raimondiiTriticum spelta52.188.6683.89211forward
CNT30361585Gossypium raimondiiSorghum bicolor18.7720.2785.5376forward
CNT30359416Gossypium raimondiiLactuca sativa47.1626.7183.25191forward
CNT30704384Gossypium raimondiiPrunus avium25.6818.6784.62104forward
CNT30331462Gossypium raimondiiDioscorea rotundata55.5643.7782.67225forward
CNT30579614Gossypium raimondiiEchinochloa crusgalli41.2342.2886.23167forward

Expression of CNT30609153

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MSCSGWNNWRYVPVLTSSITVGSRSTKMARGTCFPAPVSLKKVLKASSPPPTVLSL

>peptide 2 (40 aa)
MGPVPPPTALKTKKPWSPVQLSASFRIRSKQRSTISLPIV*

>peptide 3 (69 aa)
MATSEIVGSIFFATDELLRVEQLAVRTSPHFIDNSRLQINKDGARDVLPGTSFAEKGVESIVSSTNSLIT

Sequence

>CNT30609153
GCTGCTCATGGTAAGCCTTCTCAGCTGAAATGACAGGGGCATAAGAAGAAAGCATAAAGTGGATCCTGGGATATGGGACCAGTACCACCACCAACAGCAT
TGAAAACCAAGAAGCCTTGGAGCCCAGTACAGTTATCAGCAAGCTTTCGGATACGATCCAAGCAGAGATCAACAATCTCTTTGCCAATTGTATAATGGCC
ACGAGCGAAATTGTTGGCAGCATCTTCTTTGCCACTGATGAGTTGCTCAGGGTGGAACAACTGGCGGTACGTACCAGTCCTCACTTCATCGATAACAGTA
GGCTCCAGATCAACAAAGATGGCGCGAGGGACGTGCTTCCCGGCACCAGTTTCGCTGAAAAAGGTGTTGAAAGCATCGTCTCCTCCACCAACAGTCTTAT
CACTT