« Back to Saccharum spontaneum search


Detailed information on CNT30445136


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000220, E-value = 4e-66

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678405Saccharum spontaneumSetaria viridis48.4448.8593.55341forward
CNT30517675Saccharum spontaneumJuglans regia36.3642.3883.2256forward
CNT3071006Saccharum spontaneumQuercus suber30.8244.9384.79217forward
CNT30403515Saccharum spontaneumBeta vulgaris33.5291.8383.9236forward
CNT30296175Saccharum spontaneumTriticum aestivum29.470.8991.3207forward
CNT30220716Saccharum spontaneumHordeum vulgare19.660.5386.96138forward
CNT30237104Saccharum spontaneumBrassica oleracea21.7347.2285.62153forward
CNT30555279Saccharum spontaneumOryza glaberrima38.6487.1889.71272forward
CNT3075316Saccharum spontaneumBrassica juncea37.0787.8883.91261forward
CNT30611949Saccharum spontaneumArabis alpina13.7828.0387.6397forward
CNT3010240Saccharum spontaneumZea mays46.8835.1893.64330forward
CNT30606894Saccharum spontaneumGossypium raimondii49.7295.8983.14350forward
CNT30716286Saccharum spontaneumMalus domestica golden49.8626.8884.33351forward
CNT30340361Saccharum spontaneumEragrostis tef24.8633.4693.71175forward
CNT30596030Saccharum spontaneumOryza meridionalis22.7366.6792.5160forward
CNT30360524Saccharum spontaneumLactuca sativa44.3248.6780.77312forward
CNT30106557Saccharum spontaneumOryza longistaminata28.2792.9990.45199forward
CNT30331462Saccharum spontaneumDioscorea rotundata27.5637.7481.96194forward
CNT30575645Saccharum spontaneumOryza barthii48.7240.4591.25343forward
CNT30726253Saccharum spontaneumLupinus angustifolius49.0194.7884.06345forward
CNT3040082Saccharum spontaneumMarchantia polymorpha35.6559.7680.88251forward

Expression of CNT30445136

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MQRQTKTVPGTQACLGWCRLGAQCQGSGDRCHRWPHCRAVRQHQCARGGSGWTGHCCMAQPPR*

>peptide 2 (71 aa)
VLAMAGVTLGHHGRWLKGAVGDFSHGQLLVVGLLSGDNWSVGGKHEVDPRVGHQVGLELIHIHIKSTIEPQ*

>peptide 3 (48 aa)
MASLSSSTATSVCSRREWVDRTLLYGSTTEVETWGDGYTVNPSLDFLP*

>peptide 4 (30 aa)
YLPWRGSHLAIMDDGSKALLVISATDSCSW*

>peptide 5 (30 aa)
MVKRQKHRFQNVHQAECKGRPRQYLGHKPA*

Sequence

>CNT30445136
GTACTTGCCATGGCGGGGGTCACACTTGGCCATCATGGACGATGGCTCAAAGGCGCTGTTGGTGATTTCAGCCACGGACAGCTGCTCGTGGTAGGCCTTC
TCAGCGGAGATAACTGGAGCGTAGGAGGAAAGCATGAAGTGGATCCTCGGGTAGGGCACCAGGTTGGTCTGGAACTCATTCACATCCACATTAAGAGCAC
CATCGAACCTCAATGAGGCAGTCAGGGATGAGATGACCTGCACAAGATCAGTAACAGATAATGGTTAAGAGACAAAAACACAGATTTCAGAACGTTCACC
AGGCAGAATGCAAAGGCAGACCAAGACAGTACCTGGGACACAAGCCTGCCTAGGTTGGTGTAGGTTGGGCGCTCAATGTCAAGGGAGCGGCGACAGATGT
CATAGATGGCCTCATTGTCGAGCAGTACGGCAACATCAGTGTGCTCGAGGAGGGAGTGGGTGGACAGGACACTGTTGTATGGCTCAACCACCGAGGTAGA
GACCTGGGGGGATGGGTACACAGTGAACCCAAGCTTGGACTTCTTGCCGTAATCAACAGACAGGCGCTCCAGGAGGAGGGAACCAAGCCCAGAGCCCGTT
CCTCCCCCCAACAGCATTGAAGACGAGGAAGCCCTGGAGACCAGTGCAGTTATCGGCAAGCTTCCTAATGCGGTCAAGGCAAAGGTCAACAATCTCCTTG
CCAA