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Detailed information on CNT30435344


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ZRB7|TBA_WHEAT, E-value = 3e-43

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694759Aegilops tauschiiOryza sativa48.5530.3884.11151forward
CNT30522212Aegilops tauschiiSetaria italica50.865.0293.04158forward
CNT30517675Aegilops tauschiiJuglans regia45.6623.5188.03142forward
CNT3071006Aegilops tauschiiQuercus suber51.7733.3383.85161forward
CNT30403515Aegilops tauschiiBeta vulgaris48.8759.1486.84152forward
CNT30712809Aegilops tauschiiGlycine max47.5944.1885.81148forward
CNT30283673Aegilops tauschiiTriticum aestivum99.0410098.05308forward
CNT30220716Aegilops tauschiiHordeum vulgare73.3110094.74228forward
CNT30383371Aegilops tauschiiTriticum turgidum96.1410097.99299forward
CNT30237104Aegilops tauschiiBrassica oleracea38.5937.0485.83120forward
CNT30555279Aegilops tauschiiOryza glaberrima46.6246.4790.34145forward
CNT3059767Aegilops tauschiiArabidopsis lyrata39.5517.3586.18123forward
CNT3075316Aegilops tauschiiBrassica juncea44.0546.1386.86137forward
CNT30265527Aegilops tauschiiBrassica rapa47.5924.0385.14148forward
CNT30611949Aegilops tauschiiArabis alpina36.9833.2488.7115forward
CNT30136247Aegilops tauschiiLolium perenne98.3910091.5306forward
CNT301007Aegilops tauschiiZea mays47.9128.1792.62149forward
CNT30606894Aegilops tauschiiGossypium raimondii45.0238.3685.71140forward
CNT30655223Aegilops tauschiiRosa chinensis36.3344.4983.19113forward
CNT30210906Aegilops tauschiiHelianthus annuus29.2634.8783.5291forward
CNT30716299Aegilops tauschiiMalus domestica golden52.0926.6984.57162forward
CNT30689747Aegilops tauschiiTriticum urartu98.7110098.05307forward
CNT30721349Aegilops tauschiiTriticum spelta96.4610094.67300forward
CNT30619808Aegilops tauschiiCajanus cajan49.5225.8883.77154forward
CNT30596030Aegilops tauschiiOryza meridionalis52.4167.9292.64163forward
CNT30371253Aegilops tauschiiOryza glumipatula98.7110090.88307forward
CNT30106559Aegilops tauschiiOryza longistaminata21.5429.9192.5467forward
CNT3024647Aegilops tauschiiPopulus trichocarpa52.7331.6682.93164forward
CNT30331462Aegilops tauschiiDioscorea rotundata41.1624.985.16128forward
CNT30147962Aegilops tauschiiBrachypodium distachyon43.0939.5391.79134forward
CNT30174517Aegilops tauschiiVigna angularis44.0568.1681.02137forward
CNT30726253Aegilops tauschiiLupinus angustifolius52.4144.7887.12163forward
CNT3065151Aegilops tauschiiSelaginella moellendorffii24.7637.3885.7177forward
CNT3040082Aegilops tauschiiMarchantia polymorpha52.7339.0583.54164forward

Expression of CNT30435344

Peptides detected in this lncRNA

>peptide 1 (77 aa)
MASLSRRIETSVCSRSEWVDRTLLYGSTTERRSRRSEPRPEPVPPPTALNTRNPWRPVQLSESFLIRSRHRSTISLPT

>peptide 2 (40 aa)
LRNKPVEVGVCWALNVKGAAADVIDGLIVKKDRDISVLKE*

Sequence

>CNT30435344
ACCTGAGAAACAAGCCTGTTGAGGTTGGTGTATGTTGGGCGCTCAATGTCAAGGGAGCGGCGGCAGATGTCATAGATGGCCTCATTGTCAAGAAGGATAG
AGACATCAGTGTGCTCAAGGAGTGAGTGGGTGGACAGGACACTGTTGTATGGCTCAACAACAGAGAGGCGCTCCAGGAGAAGCGAGCCAAGGCCAGAGCC
AGTTCCACCTCCAACAGCGTTGAATACAAGGAATCCCTGGAGACCAGTGCAGTTGTCTGAAAGCTTCCTGATACGGTCAAGGCACAGATCAACAATCTCC
TTGCCAACTGC