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Detailed information on CNT30359416


BLAST search results

BLAST vs Swiss-Prot:
sp|P33624|TBA2_ANEPH, E-value = 4e-105

BLAST vs NONCODE:
NONGMAT000219, E-value = 4e-23

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30317272Lactuca sativaCorylus avellana28.2551.9382.18202forward
CNT30372848Lactuca sativaArabidopsis thaliana19.32383.33138forward
CNT30618214Lactuca sativaSesamum indicum13.7129.7982.6598forward
CNT30729860Lactuca sativaCorchorus capsularis26.7120.6584.82191forward
CNT30507454Lactuca sativaNicotiana attenuata25.4528.0483.52182forward
CNT30300679Lactuca sativaTriticum aestivum26.9988.9481.87193forward
CNT30562914Lactuca sativaActinidia chinensis30.2171.0583.8216forward
CNT30135921Lactuca sativaLolium perenne25.8749.279.46185forward
CNT3065Lactuca sativaZea mays25.8775.8281.08185forward
CNT30609153Lactuca sativaGossypium raimondii26.7147.1683.25191forward
CNT30648424Lactuca sativaRosa chinensis28.3963.2481.77203forward
CNT30204030Lactuca sativaHelianthus annuus19.1633.0183.94137forward
CNT30129276Lactuca sativaCorymbia citriodora25.7344.0287.5184forward
CNT30720142Lactuca sativaTriticum spelta13.2926.5489.4795forward
CNT30340361Lactuca sativaEragrostis tef19.1626.281.75137forward
CNT30619808Lactuca sativaCajanus cajan17.220.6786.99123forward
CNT3052700Lactuca sativaAmborella trichopoda17.0638.6186.89122forward
CNT3024647Lactuca sativaPopulus trichocarpa22.831.4782.82163forward
CNT30331462Lactuca sativaDioscorea rotundata31.0543.1986.49222forward
CNT30579614Lactuca sativaEchinochloa crusgalli25.0345.3280.45179forward

Expression of CNT30359416

Peptides detected in this lncRNA

>peptide 1 (29 aa)
TNAQKPSSHTSSQTYGQSSKTPPQLKSNY*

>peptide 2 (43 aa)
MTVGSRSTKTARGTCFPAPVSLKKVLKASSPPPTVLSLGICPSG

>peptide 3 (51 aa)
YQCTKALFAYIKSNLWSILENTSATEVELLIIQTARCTFAKSPPGTTVGGS*

Sequence

>CNT30359416
ATACCAATGCACAAAAGCCCTCTTCGCATACATCAAGTCAAACTTATGGTCAATCCTCGAAAACACCTCCGCAACTGAAGTCGAATTACTAATCATACAA
ACCGCCCGTTGCACCTTTGCCAAATCGCCACCTGGCACAACAGTCGGCGGCTCGTAATTAATCCCACACTTAAACCCAGTCGGACACCAATCCCCTCGGT
ACATCAAACAACACGCCATATACTTCCCATGCCTCGGATCACACTTCGCCATCATAGAAGAAGGCTCAAACGCACTGTTGGTTATCTCAGCAACTGACAA
CTGTTCATGGTAAGCCTTTTCAGCTGAAATCACAGGAGCGTAGGAGGAAAGCATGAAGTGAATCCTCGGATATGGAACTAGGTTAGTTTGGAATTCTGTC
ACGTCCACGTTTAAAGCTCCATCAAAACGTAACGACGCCGTTAGTGAAGAGATGACTTGGGAGACTAAACGGTTGAGATTTGTGTAGTGGCCACGTGCGA
AGTTGTTAGCGGCGTCTTCTTTGCCGCTGATTAGTTGTTCAGGGTGGAAGAGTTGGCGGTAGGTTCCGGTTCTGACTTCATCGATGACGGTTGGTTCGAG
ATCTACGAAGACGGCGCGTGGGACGTGTTTTCCGGCGCCGGTTTCGCTGAAGAAGGTGTTGAAAGCGTCGTCGCCTCCTCCGACTGTTTTGTCACTTGGC
ATTTGTCCATCAGGC