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Detailed information on CNT30579614

BLAST search results

BLAST vs Swiss-Prot:
sp|P14641|TBA2_MAIZE, E-value = 5e-49

BLAST vs NONCODE:
NONATHT003369, E-value = 1e-06

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30694759	Echinochloa crusgalli	Oryza sativa	25.32	20.12	86	100	forward
CNT30522084	Echinochloa crusgalli	Setaria italica	48.61	62.95	90.62	192	forward
CNT30317272	Echinochloa crusgalli	Corylus avellana	70.38	71.47	85.97	278	forward
CNT30372848	Echinochloa crusgalli	Arabidopsis thaliana	30.63	20.17	90.91	121	forward
CNT30493173	Echinochloa crusgalli	Olea europaea	35.95	34.38	80.99	142	forward
CNT30709004	Echinochloa crusgalli	Glycine max	13.92	20.45	89.09	55	forward
CNT30300679	Echinochloa crusgalli	Triticum aestivum	53.42	97.24	86.26	211	forward
CNT30383102	Echinochloa crusgalli	Triticum turgidum	42.28	57	91.62	167	forward
CNT30562914	Echinochloa crusgalli	Actinidia chinensis	50.63	65.79	82	200	forward
CNT30555317	Echinochloa crusgalli	Oryza glaberrima	29.37	40.56	93.1	116	forward
CNT30440804	Echinochloa crusgalli	Aegilops tauschii	10.89	20.98	90.7	43	reverse complement
CNT3079816	Echinochloa crusgalli	Brassica juncea	26.08	37.45	89.32	103	forward
CNT30611949	Echinochloa crusgalli	Arabis alpina	29.37	33.53	86.21	116	forward
CNT30446069	Echinochloa crusgalli	Saccharum spontaneum	45.32	7.89	82.68	179	forward
CNT30135921	Echinochloa crusgalli	Lolium perenne	50.38	52.93	92.46	199	forward
CNT3065	Echinochloa crusgalli	Zea mays	54.94	88.93	95.85	217	forward
CNT30609153	Echinochloa crusgalli	Gossypium raimondii	42.28	41.23	86.23	167	forward
CNT30648424	Echinochloa crusgalli	Rosa chinensis	49.62	61.06	87.76	196	forward
CNT30129276	Echinochloa crusgalli	Corymbia citriodora	46.33	43.78	90.71	183	forward
CNT30716299	Echinochloa crusgalli	Malus domestica golden	53.42	34.76	90.05	211	forward
CNT30719750	Echinochloa crusgalli	Triticum spelta	54.18	89.92	91.12	214	forward
CNT30619808	Echinochloa crusgalli	Cajanus cajan	25.32	16.81	86	100	forward
CNT30595858	Echinochloa crusgalli	Oryza meridionalis	28.86	10.24	89.47	114	forward
CNT30359416	Echinochloa crusgalli	Lactuca sativa	45.32	25.03	80.45	179	forward
CNT30369756	Echinochloa crusgalli	Oryza glumipatula	28.86	8.4	88.6	114	forward
CNT3024647	Echinochloa crusgalli	Populus trichocarpa	39.49	30.12	86.54	156	forward
CNT30331462	Echinochloa crusgalli	Dioscorea rotundata	41.52	31.91	82.32	164	forward
CNT30104286	Echinochloa crusgalli	Oryza rufipogon	27.59	16.29	90.83	109	forward
CNT30496537	Echinochloa crusgalli	Digitaria exilis	31.65	55.31	88	125	forward
CNT3040646	Echinochloa crusgalli	Marchantia polymorpha	16.71	21.29	93.94	66	forward

Expression of CNT30579614

Peptides detected in this lncRNA

>peptide 1 (72 aa)
VTTGKVVGSILLAADELLRVEELAVGASPHLIDHSGLKVNKHSTWDVLPSTSLTEEGVEGIITTPNGLVTGQ*

>peptide 2 (64 aa)
MVLSPGSRAPSTRFRPGYRPGRCGSRCTPSWCRRKGGRRRPRWGMGWRGKALSRGERRVRRRLSL

>peptide 3 (43 aa)
MWIEMHSLMVSSEGWSPAAAVGNGVEGESFESRREASTKTPFSA

Sequence

>CNT30579614
TAGTGACCACGGGCAAAGTTGTTGGCAGCATCCTCCTTGCCGCTGATGAGCTGCTCAGGGTGGAAGAGCTGGCGGTAGGTGCCAGTCCTCACCTCATCGA
TCACAGTGGGCTCAAGGTCAACAAACACAGCACGTGGGACGTGCTTCCCAGCACCAGTCTCACTGAAGAAGGTGTTGAAGGCATCATCACCACCCCCAAT
GGTCTTGTCACCGGGCAGTAGAGCTCCCAGCACGCGTTTCCGACCTGGATACCGGCCTGGCCGATGTGGATCGAGATGCACTCCCTCATGGTGTCGTCGG
AAGGGTGGTCGCCGGCGGCCGCGGTGGGGAATGGGGTGGAGGGGGAAAGCTTTGAGTCGCGGAGAGAGGCGAGTACGAAGACGCCTTTCTCTGCG