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Detailed information on CNT3075301


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692533Brassica junceaOryza sativa35.426.9382.45188forward
CNT30678671Brassica junceaSetaria viridis55.1836.1384.98293forward
CNT30640127Brassica junceaNymphaea colorata54.836.4781.79291forward
CNT30533600Brassica junceaEucalyptus grandis24.4834.7686.92130forward
CNT30547493Brassica junceaIpomoea triloba35.416.8289.36188forward
CNT30371538Brassica junceaArabidopsis thaliana34.8438.9591.35185forward
CNT30618173Brassica junceaSesamum indicum29.9420.0586.16159forward
CNT3071007Brassica junceaQuercus suber33.5234.8388.2178forward
CNT30379210Brassica junceaManihot esculenta33.7133.2191.06179forward
CNT30507454Brassica junceaNicotiana attenuata20.3416.6493.52108forward
CNT30712809Brassica junceaGlycine max55.1887.4682.25293forward
CNT3098615Brassica junceaSolanum tuberosum20.3421.0589.81108forward
CNT30283587Brassica junceaTriticum aestivum34.8425.8487.57185forward
CNT30224141Brassica junceaHordeum vulgare35.427.6583.51188forward
CNT30382785Brassica junceaTriticum turgidum34.8424.3187.57185forward
CNT3086234Brassica junceaVigna radiata30.8930.9487.2164forward
CNT30144688Brassica junceaMedicago truncatula27.8741.6987.16148forward
CNT30439881Brassica junceaAegilops tauschii35.424.5185.64188forward
CNT30247087Brassica junceaAvena sativa35.425.6887.77188forward
CNT30655883Brassica junceaTriticum dicoccoides34.8425.9187.57185forward
CNT30136973Brassica junceaLolium perenne20.1525.4888.79107forward
CNT3041219Brassica junceaChlamydomonas reinhardtii25.9924.2184.06138forward
CNT30229012Brassica junceaAnanas comosus21.4713.7586.84114forward
CNT30219368Brassica junceaKalanchoe fedtschenkoi25.2422.9587.31134forward
CNT30208739Brassica junceaHelianthus annuus16.5722.2894.3288forward
CNT30689745Brassica junceaTriticum urartu34.8424.2887.57185forward
CNT30362155Brassica junceaSorghum bicolor51.625.1184.31274forward
CNT30360524Brassica junceaLactuca sativa46.8938.8581.53249forward
CNT30371316Brassica junceaOryza glumipatula55.1824.8385.32293forward
CNT30570163Brassica junceaVitis vinifera34.2721.9885.16182forward
CNT30331462Brassica junceaDioscorea rotundata33.7134.8284.36179forward
CNT30148523Brassica junceaBrachypodium distachyon46.5238.2983247forward
CNT30104015Brassica junceaOryza rufipogon33.3314.6584.75177forward
CNT30582828Brassica junceaEchinochloa crusgalli35.421.9184.04188forward
CNT30593783Brassica junceaEragrostis curvula35.435.6181.91188forward
CNT3040082Brassica junceaMarchantia polymorpha53.367.3881.27283forward

Expression of CNT3075301

Peptides detected in this lncRNA

>peptide 1 (39 aa)
SNLWSILENTSATLVELEIIHTALCTLARSPPGTTVGGW*

>peptide 2 (82 aa)
MVRLVLMVGVGRPLNVKGTSADVVDSFIVEEDRDISVFQEGVSGEDTVVRLNNRGRDLWRWVNSEPELGLFPIVDREPLEEK*

>peptide 3 (66 aa)
IELVVNPREHLSNTRGVGDHTHSSLHFSKVTSWNNSWWLVVDTALESSRTPVNKLDGTLGLDGWCR*

Sequence

>CNT3075301
ATCGAACTTGTGGTCAATCCTCGAGAACACCTCAGCAACACTCGTGGAGTTGGAGATCATACACACAGCTCTCTGCACTTTAGCAAGGTCACCTCCTGGA
ACAACAGTTGGTGGCTGGTAGTTGATACCGCACTTGAATCCAGTAGGACACCAGTCAACAAACTGGATGGTACGCTTGGTCTTGATGGTTGGTGTAGGTA
GGCCTCTCAATGTTAAGGGAACGTCTGCAGATGTCGTAGATAGCTTCATTGTCGAGGAGGATAGAGACATCAGTGTGTTCCAAGAGGGAGTGAGTGGAGA
GGACACTGTTGTAAGGCTCAACAACAGAGGTAGAGACCTGTGGAGATGGGTAAACAGTGAACCCGAGCTTGGACTTTTTCCCATAGTCGACAGAGAGCCT
CTCGAGGAGAAGTGATCCAAGACCAGATCCAGTACCTCCTCCAACAGCGTTGAAGACAAGGAACCCTTGGAGACCAGTGTTGAAAGCATCGTCACCTCCG
CCAACAGTCTTGTCACTTGGCATCTGTCCAT