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Detailed information on CNT30596030


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6VAG0|TBA2_GOSHI, E-value = 4e-30

BLAST vs NONCODE:
NONGMAT000220, E-value = 6e-38

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694759Oryza meridionalisOryza sativa58.3328.1787.14140forward
CNT30522212Oryza meridionalisSetaria italica68.3367.4995.73164forward
CNT30640127Oryza meridionalisNymphaea colorata67.520.385.19162forward
CNT3071006Oryza meridionalisQuercus suber63.7531.6883.01153forward
CNT30712809Oryza meridionalisGlycine max62.0844.4886.58149forward
CNT30283673Oryza meridionalisTriticum aestivum67.9252.9293.25163forward
CNT30392708Oryza meridionalisTriticum turgidum10093.0291.67240forward
CNT30435344Oryza meridionalisAegilops tauschii67.9252.4192.64163forward
CNT30445136Oryza meridionalisSaccharum spontaneum66.6722.7392.5160forward
CNT30229091Oryza meridionalisAnanas comosus5536.8782.58132forward
CNT30655223Oryza meridionalisRosa chinensis47.0844.4985.84113forward
CNT30689748Oryza meridionalisTriticum urartu68.3353.7793.29164forward
CNT30721349Oryza meridionalisTriticum spelta63.755193.46153forward
CNT30704384Oryza meridionalisPrunus avium23.3310.0589.2956forward
CNT30331462Oryza meridionalisDioscorea rotundata52.0824.3284125forward
CNT30174517Oryza meridionalisVigna angularis4047.7686.4696forward
CNT3040082Oryza meridionalisMarchantia polymorpha67.538.5786.42162forward

Expression of CNT30596030

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MAQPQRKPWRPVQLSASFLMRSRHRSTISLP

>peptide 2 (54 aa)
MASLSSRTATSVCSRREWVERTLLYGSTTEETLETSAVVSKLPDAVKAQINNLLA

>peptide 3 (67 aa)
LRHKPVEVCVGWALNVKGAAADVIDGLIIKQNSNISVLKEGVGGEDTVVWLNHRGNLGDQCSCQQAS*

Sequence

>CNT30596030
CTGAGACACAAGCCTGTTGAGGTTTGTGTAGGTTGGGCGCTCAATGTCAAGGGAGCGGCGGCAGATGTCATAGATGGCCTCATTATCAAGCAGAACAGCA
ACATCAGTGTGCTCAAGGAGGGAGTGGGTGGAGAGGACACTGTTGTATGGCTCAACCACAGAGGAAACCTTGGAGACCAGTGCAGTTGTCAGCAAGCTTC
CTGATGCGGTCAAGGCACAGATCAACAATCTCCTTGCCAA