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Detailed information on CNT30106559


BLAST search results

BLAST vs Swiss-Prot:
sp|P46259|TBA1_PEA, E-value = 6e-19

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694759Oryza longistaminataOryza sativa30.813.8888.4169forward
CNT30677947Oryza longistaminataSetaria viridis48.6616.3989.91109forward
CNT30547360Oryza longistaminataIpomoea triloba64.7362.7783.45145forward
CNT3071006Oryza longistaminataQuercus suber25.8912.0191.3858forward
CNT30710214Oryza longistaminataGlycine max67.4149.6785.43151forward
CNT30296175Oryza longistaminataTriticum aestivum29.9122.9594.0367forward
CNT30220716Oryza longistaminataHordeum vulgare29.9129.3994.0367forward
CNT30391993Oryza longistaminataTriticum turgidum29.9128.1594.0367forward
CNT30237104Oryza longistaminataBrassica oleracea56.739.283.46127forward
CNT30555279Oryza longistaminataOryza glaberrima48.6634.9498.17109forward
CNT30435344Oryza longistaminataAegilops tauschii29.9121.5492.5467forward
CNT3075316Oryza longistaminataBrassica juncea35.7126.9486.2580forward
CNT30265527Oryza longistaminataBrassica rapa29.0210.5586.1565forward
CNT30136247Oryza longistaminataLolium perenne29.9121.989.5567forward
CNT30606894Oryza longistaminataGossypium raimondii21.8813.4289.849forward
CNT30648424Oryza longistaminataRosa chinensis23.6616.5190.5753forward
CNT30716286Oryza longistaminataMalus domestica golden38.846.6687.3687forward
CNT30683531Oryza longistaminataTriticum urartu29.9121.8294.0367forward
CNT30721658Oryza longistaminataTriticum spelta48.2126.0288.89108forward
CNT30619808Oryza longistaminataCajanus cajan30.811.685.5169forward
CNT30356256Oryza longistaminataLactuca sativa41.0717.7684.7892forward
CNT30331462Oryza longistaminataDioscorea rotundata29.9113.0486.5767forward
CNT30147962Oryza longistaminataBrachypodium distachyon75.4549.8591.72169forward
CNT30578324Oryza longistaminataOryza barthii75.8917.3198.82170forward
CNT30117847Oryza longistaminataOryza nivara75.8918.1498.82170forward
CNT30174517Oryza longistaminataVigna angularis30.834.3388.4169forward
CNT3065151Oryza longistaminataSelaginella moellendorffii26.3428.6488.1459forward
CNT3040082Oryza longistaminataMarchantia polymorpha27.6814.7687.162forward

Expression of CNT30106559

Peptides detected in this lncRNA

>peptide 1 (48 aa)
LGHKPVEVGVGWALXXXXCHRWPHCRAGQRHQCAQGGSGWRPEGTGTR*

Sequence

>CNT30106559
CTGGGACACAAGCCTGTTGAGGTTGGTGTAGGTTGGGCGCTCAGNNNNNNNNNNTGTCATAGATGGCCTCATTGTCGAGCAGGACAGCGACATCAGTGTG
CTCAAGGAGGGAGTGGGTGGAGACCTGAGGGGACGGGTACACGGTGAACCCGAGCTTGGACTTCTTGCCATAGTCCACAGAGAGACGCTCAAGGAGAAGG
GAACCGAGACCGGAGCCCGTTCCT