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Detailed information on CNT30174517


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694759Vigna angularisOryza sativa68.6627.7784.06138forward
CNT30678781Vigna angularisSetaria viridis68.6631.2284.06138forward
CNT30522212Vigna angularisSetaria italica68.1656.3883.94137forward
CNT3021397Vigna angularisCitrullus lanatus68.6620.8580.43138forward
CNT3071006Vigna angularisQuercus suber62.1925.8883.2125forward
CNT30708966Vigna angularisGlycine max46.2734.796.7793forward
CNT30220716Vigna angularisHordeum vulgare45.7740.3585.8792forward
CNT30391993Vigna angularisTriticum turgidum80.167.6581.99161forward
CNT30237104Vigna angularisBrassica oleracea33.8320.9985.2968forward
CNT30555279Vigna angularisOryza glaberrima53.7334.6286.11108forward
CNT30435344Vigna angularisAegilops tauschii68.1644.0581.02137forward
CNT3079816Vigna angularisBrassica juncea63.6846.5582.81128forward
CNT30611949Vigna angularisArabis alpina33.8319.6585.2968forward
CNT30136247Vigna angularisLolium perenne68.1644.7781.02137forward
CNT301007Vigna angularisZea mays68.1625.984.67137forward
CNT3041219Vigna angularisChlamydomonas reinhardtii79.127.8982.39159forward
CNT30606894Vigna angularisGossypium raimondii66.6736.7183.58134forward
CNT30229091Vigna angularisAnanas comosus63.6835.7581.25128forward
CNT30716286Vigna angularisMalus domestica golden89.0513.7181.01179forward
CNT30683531Vigna angularisTriticum urartu68.1644.6383.21137forward
CNT30721349Vigna angularisTriticum spelta68.1645.6783.21137forward
CNT30619808Vigna angularisCajanus cajan57.2119.3385.22115forward
CNT30596030Vigna angularisOryza meridionalis47.764086.4696forward
CNT30360524Vigna angularisLactuca sativa46.2714.5186.0293forward
CNT30371316Vigna angularisOryza glumipatula89.0515.1784.36179forward
CNT3056297Vigna angularisAmborella trichopoda62.1938.9480.8125forward
CNT30106559Vigna angularisOryza longistaminata34.3330.888.4169forward
CNT3024647Vigna angularisPopulus trichocarpa68.1626.4581.75137forward
CNT30331462Vigna angularisDioscorea rotundata59.223.1584.03119forward
CNT30148523Vigna angularisBrachypodium distachyon65.1720.3187.02131forward
CNT30104015Vigna angularisOryza rufipogon88.5614.7484.27178forward
CNT30578286Vigna angularisOryza barthii68.6614.3786.23138forward
CNT30117881Vigna angularisOryza nivara64.1814.9186.05129forward
CNT30726253Vigna angularisLupinus angustifolius45.7725.2786.9692forward
CNT3065151Vigna angularisSelaginella moellendorffii45.2744.1782.4291forward

Expression of CNT30174517

Peptides detected in this lncRNA

>peptide 1 (50 aa)
VQVGVSGSLDVEGSPADVVDGFIVQQDSHVGVLQEGVGGEDAVVGFNDGG*

>peptide 2 (58 aa)
SGWCKWVSRCRGISCRCRRWLHCPTGQPRRCAPGGSGWRGRCCRVQRRRLKPEGKDKW*

Sequence

>CNT30174517
GTTCAGGTTGGTGTAAGTGGGTCTCTCGATGTCGAGGGATCTCCTGCAGATGTCGTAGATGGCTTCATTGTCCAACAGGACAGCCACGTCGGTGTGCTCC
AGGAGGGAGTGGGTGGAGAGGACGCTGTTGTAGGGTTCAACGACGGCGGTTGAAACCTGAGGGGAAGGATAAATGGTGAACCCTAATTTGGATTTTTAGT
C