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Detailed information on CNT30683531


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6VAG0|TBA2_GOSHI, E-value = 7e-43

BLAST vs NONCODE:
NONGMAT000220, E-value = 5e-36

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694759Triticum urartuOryza sativa45.628.1787.14140forward
CNT30522212Triticum urartuSetaria italica51.4765.0294.3158forward
CNT30547605Triticum urartuIpomoea triloba89.2549.9187.23274forward
CNT30403515Triticum urartuBeta vulgaris48.8658.3788150forward
CNT30712809Triticum urartuGlycine max47.8843.8888.44147forward
CNT30296001Triticum urartuTriticum aestivum96.0973.9396.61295forward
CNT30555279Triticum urartuOryza glaberrima47.2346.4791.72145forward
CNT3075316Triticum urartuBrassica juncea44.6346.1387.59137forward
CNT30611949Triticum urartuArabis alpina37.4633.2489.57115forward
CNT30136247Triticum urartuLolium perenne99.6710093.14306forward
CNT30606894Triticum urartuGossypium raimondii45.638.3687.14140forward
CNT30229091Triticum urartuAnanas comosus4336.8781.82132forward
CNT30655223Triticum urartuRosa chinensis36.8144.4984.07113forward
CNT30716286Triticum urartuMalus domestica golden47.5611.1886.99146forward
CNT30721349Triticum urartuTriticum spelta97.72100100300forward
CNT30371253Triticum urartuOryza glumipatula96.0996.0993.22295forward
CNT30106559Triticum urartuOryza longistaminata21.8229.9194.0367forward
CNT30331462Triticum urartuDioscorea rotundata41.6924.985.94128forward
CNT30147962Triticum urartuBrachypodium distachyon43.6539.5392.54134forward
CNT30174517Triticum urartuVigna angularis44.6368.1683.21137forward
CNT3065151Triticum urartuSelaginella moellendorffii25.0837.3885.7177forward
CNT3040082Triticum urartuMarchantia polymorpha53.4239.0583.54164forward

Expression of CNT30683531

Peptides detected in this lncRNA

>peptide 1 (94 aa)
LRNEPIEVGVCWALNVKGAAADVIDGLIVKEDSHISVLKERVGGQDTVVWLNNRETLKEKRTKARASSTSNSVEDKEPLETSAVVCKLPDTVKA*

>peptide 2 (76 aa)
MASLSRRTATSVCSRREWVDRTLLYGSTTERRSRRREPRPEPVPPPTALKTRNPWRPVQLSASFLIRSRHRSTISLP

>peptide 3 (63 aa)
MLGAQCQGSGGRCHRWPHCQGGQPHQCAQGESGWTGHCCMAQQQRDAQGEENQGQSQFHLQQR*

Sequence

>CNT30683531
ACCTGAGAAACGAGCCTATTGAGGTTGGTGTATGTTGGGCGCTCAATGTCAAGGGAGCGGCGGCAGATGTCATAGATGGCCTCATTGTCAAGGAGGACAG
CCACATCAGTGTGCTCAAGGAGAGAGTGGGTGGACAGGACACTGTTGTATGGCTCAACAACAGAGAGACGCTCAAGGAGAAGAGAACCAAGGCCAGAGCC
AGTTCCACCTCCAACAGCGTTGAAGACAAGGAACCCCTGGAGACCAGTGCAGTTGTCTGCAAGCTTCCTGATACGGTCAAGGCATAGGTCAACAATCTCC
TTGCCAA