Detailed information on CNT30677947


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6VAG0|TBA2_GOSHI, E-value = 5e-66

BLAST vs NONCODE:
NONGMAT000220, E-value = 4e-69

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30517675Setaria viridisJuglans regia36.5440.2383.95243forward
CNT30403515Setaria viridisBeta vulgaris33.5386.7786.1223forward
CNT30220716Setaria viridisHordeum vulgare20.660.0991.97137forward
CNT30555279Setaria viridisOryza glaberrima40.7586.8691.51271forward
CNT3075316Setaria viridisBrassica juncea38.9587.2186.49259forward
CNT3010240Setaria viridisZea mays60.1542.6494.5400forward
CNT30210906Setaria viridisHelianthus annuus33.9886.5982.74226forward
CNT30106559Setaria viridisOryza longistaminata16.3948.6689.91109forward
CNT30331462Setaria viridisDioscorea rotundata32.7842.4183.03218forward

Expression of CNT30677947

Peptides detected in this lncRNA

>peptide 1 (62 aa)
LIQKRSRTKQVSYNIRCCKRHTTTDNSSNRHTDTQQDKIGATRADHRITAAHRPDTAAGSIV*

>peptide 2 (48 aa)
MASLSSRTATSVCSRREWVDRTLLYGSTTEVETWGDGYTVNPSLDFLP*

>peptide 3 (31 aa)
MRSRHRSTKTARGTCFPAPVSLKKVLKASSPP

Sequence

>CNT30677947
TTAATCCAGAAACGAAGCAGGACTAAACAAGTTTCTTACAACATAAGATGTTGTAAACGACATACGACGACAGATAACAGTTCAAACCGACACACCGACA
CACAACAAGATAAGATAGGAGCCACTCGGGCAGATCATAGGATAACCGCGGCACACAGGCCTGACACAGCAGCAGGAAGCATCGTCTAGTACTCGTCACC
CTCGTCTCCTTCCTCGCCCTCGTCAAACTTGTGGTCGATGCGGGAGAACACCTCGACCACGCTGGTGGGGCGCTCAATGTCAAGGGAGCGGCGGCAGATG
TCATAGATGGCCTCATTGTCAAGCAGAACAGCAACATCAGTGTGCTCGAGGAGGGAGTGGGTGGACAGGACACTGTTGTATGGCTCAACCACTGAGGTGG
AGACCTGGGGAGATGGGTACACAGTGAACCCGAGCTTGGACTTCTTGCCATAGTCAACAGACAGACGCTCAAGGAGGAGAGAACCAAGACCAGAGCCTGT
TCCTCCACCAACAGCATTGAAGACAAGGAAGCCCTGGAGACCAGTGCAGTTGTCGGCAAGCTTCCTGATGCGGTCAAGGCACAGGTCAACAAAAACAGCA
CGGGGCACATGCTTCCCAGCACCAGTCTCACTGAAGAAGGTGTTGAAAGCATCATCACCTCCTCC