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Detailed information on CNT30317272


BLAST search results

BLAST vs Swiss-Prot:
sp|P33628|TBA_PICAB, E-value = 4e-43

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677979Corylus avellanaSetaria viridis50.920.8684.85198forward
CNT30522084Corylus avellanaSetaria italica19.5424.9289.4776forward
CNT30372848Corylus avellanaArabidopsis thaliana31.8820.6787.1124forward
CNT30729860Corylus avellanaCorchorus capsularis44.4718.787.28173forward
CNT30296001Corylus avellanaTriticum aestivum24.9424.3187.6397forward
CNT30383102Corylus avellanaTriticum turgidum41.1354.6184.38160forward
CNT30562915Corylus avellanaActinidia chinensis20.0534.2193.5978forward
CNT30553219Corylus avellanaOryza glaberrima19.5436.8989.4776forward
CNT3079816Corylus avellanaBrassica juncea24.1634.1888.394forward
CNT30611949Corylus avellanaArabis alpina21.3423.9986.7583forward
CNT30446069Corylus avellanaSaccharum spontaneum44.737.6781.03174forward
CNT30135921Corylus avellanaLolium perenne47.0448.6786.34183forward
CNT3065Corylus avellanaZea mays44.7371.3186.21174forward
CNT30609153Corylus avellanaGossypium raimondii49.8747.987.11194forward
CNT30648424Corylus avellanaRosa chinensis51.9362.9385.64202forward
CNT30129276Corylus avellanaCorymbia citriodora43.9640.9187.13171forward
CNT30716299Corylus avellanaMalus domestica golden52.9633.9488.35206forward
CNT30719750Corylus avellanaTriticum spelta50.3982.3584.18196forward
CNT30361871Corylus avellanaSorghum bicolor44.7310.1982.18174forward
CNT30595858Corylus avellanaOryza meridionalis26.489.2586.41103forward
CNT30359416Corylus avellanaLactuca sativa51.9328.2582.18202forward
CNT30369756Corylus avellanaOryza glumipatula26.487.5986.41103forward
CNT30704384Corylus avellanaPrunus avium20.5714.3691.2580forward
CNT3024647Corylus avellanaPopulus trichocarpa41.1330.8988.12160forward
CNT30331462Corylus avellanaDioscorea rotundata51.9339.381.68202forward
CNT30100745Corylus avellanaOryza rufipogon26.488.9486.41103forward
CNT30579614Corylus avellanaEchinochloa crusgalli71.4770.3885.97278forward
CNT30496537Corylus avellanaDigitaria exilis29.8251.3381.03116forward

Expression of CNT30317272

Peptides detected in this lncRNA

>peptide 1 (99 aa)
MTVGSRSTKTARGTCFPAPVSLKKVLKASSPPPTVLSLGSRVPSRHCRPEYRPDRCGSKCTLSFSQRLRRVEEERNSRTRRMKKEGKMYCRRVSRRLSNC

>peptide 2 (69 aa)
GKVVGSVFLAADELLRVEKLTVCSGPHFINDSGFQINKDGTRNVLPSTSFTEKGVEGIVSSADRLVTRQ*

Sequence

>CNT30317272
TGGCAAAGTTGTTGGCAGCGTCTTCCTTGCCGCTGATGAGTTGCTCCGGGTGGAAAAGCTGACGGTATGCTCCGGTCCTCACTTCATCAATGACAGTGGG
TTCCAGATCAACAAAGACGGCACGAGGAACGTGCTTCCCAGCACCAGTTTCACTGAAAAAGGTGTTGAAGGCATCGTCTCCTCCGCCGACCGTCTTGTCA
CTCGGCAGTAGAGTTCCCAGCAGGCATTGCCGACCTGAATACCGGCCTGACCGATGTGGATCGAAATGCACTCTCTCATTTTCTCAGAGATTACGAAGGG
TAGAAGAAGAGCGAAATTCTAGAACAAGAAGAATGAAGAAAGAAGGGAAAATGTATTGTCGGCGTGTATCAAGACGCCTTTCAAATTGT