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Detailed information on CNT30555279


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6VAG0|TBA2_GOSHI, E-value = 2e-44

BLAST vs NONCODE:
NONGMAT000220, E-value = 1e-67

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694759Oryza glaberrimaOryza sativa70.8344.4782.35221forward
CNT30677947Oryza glaberrimaSetaria viridis86.8640.7591.51271forward
CNT30640127Oryza glaberrimaNymphaea colorata79.4931.0883.06248forward
CNT30517675Oryza glaberrimaJuglans regia81.7342.2283.92255forward
CNT30727923Oryza glaberrimaCorchorus capsularis81.0921.3784.98253forward
CNT3071006Oryza glaberrimaQuercus suber44.8728.9981.43140forward
CNT30403515Oryza glaberrimaBeta vulgaris77.2493.7784.23241forward
CNT30712809Oryza glaberrimaGlycine max80.4574.9385.66251forward
CNT30296175Oryza glaberrimaTriticum aestivum41.9944.8693.13131forward
CNT30220716Oryza glaberrimaHordeum vulgare42.3157.8990.91132forward
CNT30394677Oryza glaberrimaTriticum turgidum72.1278.487.11225forward
CNT30237104Oryza glaberrimaBrassica oleracea62.560.1983.08195forward
CNT30435344Oryza glaberrimaAegilops tauschii46.4746.6290.34145forward
CNT3075316Oryza glaberrimaBrassica juncea83.6587.8885.82261forward
CNT30611949Oryza glaberrimaArabis alpina38.1434.3988.24119forward
CNT30445136Oryza glaberrimaSaccharum spontaneum87.1838.6489.71272forward
CNT30136247Oryza glaberrimaLolium perenne46.4747.3991.72145forward
CNT30606894Oryza glaberrimaGossypium raimondii88.7875.8982.31277forward
CNT30210906Oryza glaberrimaHelianthus annuus66.0378.9381.55206forward
CNT30716286Oryza glaberrimaMalus domestica golden86.2220.686.25269forward
CNT30683531Oryza glaberrimaTriticum urartu46.4747.2391.72145forward
CNT30721658Oryza glaberrimaTriticum spelta66.9950.3690.91209forward
CNT30620135Oryza glaberrimaCajanus cajan65.0664.8682.76203forward
CNT30356256Oryza glaberrimaLactuca sativa65.0639.1985.22203forward
CNT30106559Oryza glaberrimaOryza longistaminata34.9448.6698.17109forward
CNT3024757Oryza glaberrimaPopulus trichocarpa77.2492.3482.16241forward
CNT30331462Oryza glaberrimaDioscorea rotundata35.2621.483.64110forward
CNT30147962Oryza glaberrimaBrachypodium distachyon65.0659.8891.13203forward
CNT30174517Oryza glaberrimaVigna angularis34.6253.7386.11108forward
CNT30726236Oryza glaberrimaLupinus angustifolius84.6232.5586.36264forward
CNT3040082Oryza glaberrimaMarchantia polymorpha65.0648.3381.28203forward

Expression of CNT30555279

Peptides detected in this lncRNA

>peptide 1 (44 aa)
LGHKPVEVGVAGQRHRCAQGGSGWRGHCCMAQPQRWRPEGTGTR*

Sequence

>CNT30555279
CTGGGACACAAGCCTGTTGAGGTTGGTGTAGCAGGACAGCGACATCGGTGTGCTCAAGGAGGGAGTGGGTGGAGAGGACACTGTTGTATGGCTCAACCAC
AGAGGTGGAGACCTGAGGGGACGGGTACACGGTGAACCCAAGCTTGGACTTCTTGCCATAGTCCACGGAGAGACGCTCAAGGAGAAGGGAACCGAGACCG
GAGCCCGTTCCTCCTCCAACAGCGTTGAACACAAGGAAGCCCTGGAGACCAGTGCAGTTGTCGGCAAGCTTCCTGATGCGGTCAAGGCACAGATCAACAA
TCTCCTTGCCAA