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Detailed information on CNT30648424


BLAST search results

BLAST vs Swiss-Prot:
sp|P33628|TBA_PICAB, E-value = 7e-43

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677979Rosa chinensisSetaria viridis56.719.1891.21182forward
CNT30521842Rosa chinensisSetaria italica27.739.6495.5189forward
CNT30317272Rosa chinensisCorylus avellana62.9351.9385.64202forward
CNT30517675Rosa chinensisJuglans regia26.4814.0784.7185forward
CNT30372848Rosa chinensisArabidopsis thaliana31.4616.8389.11101forward
CNT30729860Rosa chinensisCorchorus capsularis52.0218.0585.63167forward
CNT30403515Rosa chinensisBeta vulgaris31.7839.6984.31102forward
CNT30296001Rosa chinensisTriticum aestivum31.4625.3192.08101forward
CNT30383102Rosa chinensisTriticum turgidum52.025787.43167forward
CNT30562914Rosa chinensisActinidia chinensis58.5761.8479.79188forward
CNT30555317Rosa chinensisOryza glaberrima33.3337.4187.85107forward
CNT3079816Rosa chinensisBrassica juncea24.9229.0992.580forward
CNT30135921Rosa chinensisLolium perenne57.6349.289.19185forward
CNT3065Rosa chinensisZea mays64.1784.4387.86206forward
CNT30609153Rosa chinensisGossypium raimondii60.7548.1584.62195forward
CNT30129276Rosa chinensisCorymbia citriodora52.6540.4386.98169forward
CNT30716299Rosa chinensisMalus domestica golden63.2433.4489.66203forward
CNT30689749Rosa chinensisTriticum urartu32.0920.8184.47103forward
CNT30719750Rosa chinensisTriticum spelta64.1786.5587.38206forward
CNT30361585Rosa chinensisSorghum bicolor31.4626.9393.07101forward
CNT30619808Rosa chinensisCajanus cajan30.5316.4787.7698forward
CNT30595858Rosa chinensisOryza meridionalis31.469.0794.06101forward
CNT30359416Rosa chinensisLactuca sativa63.2428.3981.77203forward
CNT30369756Rosa chinensisOryza glumipatula31.467.4493.07101forward
CNT30106559Rosa chinensisOryza longistaminata16.5123.6690.5753forward
CNT3024647Rosa chinensisPopulus trichocarpa51.7132.0589.16166forward
CNT30331462Rosa chinensisDioscorea rotundata64.840.4781.25208forward
CNT30100745Rosa chinensisOryza rufipogon31.468.7793.07101forward
CNT30575848Rosa chinensisOryza barthii31.4611.2393.07101forward
CNT30579614Rosa chinensisEchinochloa crusgalli61.0649.6287.76196forward
CNT30496537Rosa chinensisDigitaria exilis30.5343.3683.6798forward
CNT30117821Rosa chinensisOryza nivara55.7616.1488.27179forward

Expression of CNT30648424

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MSCSGWKSWRYVPVLTSSMTVGSKSTNTARGTCFPAPVSLKKVLKASSPPPTVLSLGI

>peptide 2 (29 aa)
TVVGLNHRGRYLWRGVDSESKLGLLAIVH*

Sequence

>CNT30648424
CACTGTTGTAGGGCTCAACCACAGAGGTAGATACTTGTGGAGAGGGGTAGACAGTGAATCCAAGCTTGGACTTCTTGCCATAGTCCACTGAGAGACGTTC
CAGTAAAAGGGAGCCAAGTTGTTAGCTGCATCTTCCTTGCCACTGATGAGCTGTTCAGGGTGGAAGAGTTGGCGGTATGTTCCAGTCCTCACTTCATCAA
TGACGGTGGGCTCCAAATCGACAAACACTGCACGAGGCACATGCTTCCCAGCACCAGTCTCACTGAAGAAGGTGTTGAAAGCATCATCACCTCCACCAAC
GGTCTTGTCACTTGGCATCTG