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Detailed information on CNT3023343


BLAST search results

BLAST vs Swiss-Prot:
sp|P84989|PSBO_POPEU, E-value = 4e-23

BLAST vs NONCODE:
NONSLYT000855, E-value = 2e-50

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535986Populus trichocarpaEucalyptus grandis47.1747.8178.86350forward
CNT30317789Populus trichocarpaCorylus avellana27.3610084.73203forward
CNT30546556Populus trichocarpaIpomoea triloba33.2920.6784.62247forward
CNT30515361Populus trichocarpaJuglans regia43.1372.485.62320forward
CNT30700663Populus trichocarpaQuercus lobata37.0651.8988.73275forward
CNT30378380Populus trichocarpaArabidopsis thaliana31.6747.6779.57235forward
CNT30277684Populus trichocarpaChenopodium quinoa42.1834.9381.47313forward
CNT30727933Populus trichocarpaCorchorus capsularis38.0118.8687.59282forward
CNT30379569Populus trichocarpaManihot esculenta37.7431.7888.21280forward
CNT30525147Populus trichocarpaPhaseolus vulgaris49.0659.4881.32364forward
CNT30710434Populus trichocarpaGlycine max35.7127.9285.66265forward
CNT3042430Populus trichocarpaPrunus dulcis30.5920.8486.34227forward
CNT3091587Populus trichocarpaSolanum tuberosum43.487.2682.3322forward
CNT30565923Populus trichocarpaActinidia chinensis84.2330.7682.72625forward
CNT30592119Populus trichocarpaMusa acuminata20.6216.9481.05153forward
CNT3086209Populus trichocarpaVigna radiata35.5818.5483.71264forward
CNT30543261Populus trichocarpaBrassica napus33.9646.7581.75252forward
CNT30238377Populus trichocarpaBrassica oleracea28.5739.4883.02212forward
CNT30508746Populus trichocarpaSolanum lycopersicum29.9226.8183.33222forward
CNT30147240Populus trichocarpaMedicago truncatula34.168.5686.56253forward
CNT30244672Populus trichocarpaAvena sativa22.122.0779.88164forward
CNT30264716Populus trichocarpaBrassica rapa33.9614.0282.54252forward
CNT30612619Populus trichocarpaArabis alpina16.0431.484.03119forward
CNT30597992Populus trichocarpaFraxinus excelsior19.9542.4186.49148forward
CNT30607994Populus trichocarpaGossypium raimondii35.5830.4187.5264forward
CNT30207216Populus trichocarpaHelianthus annuus31.8143.378.39236forward
CNT30713316Populus trichocarpaMalus domestica golden25.220.0685.03187forward
CNT30626592Populus trichocarpaDaucus carota42.0535.4181.73312forward
CNT30477612Populus trichocarpaArabidopsis halleri32.4848.3983.82241forward
CNT30621504Populus trichocarpaCajanus cajan35.1816.5682.38261forward
CNT30357143Populus trichocarpaLactuca sativa37.0638.1482.55275forward
CNT30408540Populus trichocarpaPapaver somniferum33.8358.9280.08251forward
CNT30571041Populus trichocarpaVitis vinifera20.7542.4285.71154forward
CNT30704492Populus trichocarpaPrunus avium28.7122.6884.04213forward
CNT30121175Populus trichocarpaCitrus clementina42.7269.5285.8317forward
CNT3036059Populus trichocarpaCucumis melo29.3835.6285.32218forward
CNT30584089Populus trichocarpaEchinochloa crusgalli23.3214.6479.77173forward
CNT30557822Populus trichocarpaPanicum hallii23.3224.7979.19173forward
CNT30725966Populus trichocarpaLupinus angustifolius47.9826.2583.99356forward
CNT3051042Populus trichocarpaCucumis sativus44.4760.5584.24330forward

Expression of CNT3023343

Peptides detected in this lncRNA

>peptide 1 (70 aa)
MSLVFWNSGGAFLLTLSALTVNEVGSRQNFLALYLPGLKANDSAPPSRVGHWLAVPDPFTSMYVLLWISS*

>peptide 2 (47 aa)
MISPVSGLLLVTLRVILPVDDAVFLMFSLSSSSSSPLPPAGNATALS*

>peptide 3 (35 aa)
MVPSGETSKGQTCHELSVLELRWGILAYTFSLDSE*

>peptide 4 (31 aa)
MQLHCHNRLSHLFPLGPRKMNLGRMVQGTLH*

Sequence

>CNT3023343
TGAAGACTCTCAAACACTCCTATGATCTCTCCAGTCTCAGGCTTGCTCTTGGTCACACTTAGGGTGATTTTACCTGTTGATGATGCGGTGTTCTTGATGT
TTTCCTTGAGTAGTTCCTCCTCATCTCCTCTGCCTCCAGCAGGCAATGCAACTGCATTGTCATAACCGGTTGAGCCACCTCTTCCCTTTGGGTCCAAGAA
AGATGAACCTCGGTAGGATGGTACAAGGAACTCTCCACTGAAGCTCTCTGGTTTTCCTGATGCTGCTAATTGTTTAATGGTGAAAAGGAAAGGCACACGC
TCGCCACCAGGCAGCTGAACGGTCACAGCAGCATAGTCAATACCATCTTTCTCCTCAAACTTGATGGTTCCATCGGGAGAGACTTCGAAAGGTCAAACGT
GTCATGAGCTTAGTGTTTTGGAACTCAGGTGGGGCATTCTTGCTTACACTTTCAGCCTTGACAGTGAATGAAGTTGGCTCCAGGCAGAACTTCTTAGCAT
TGTATTTGCCAGGCTTGAAGGCAAATGACTCAGCTCCCCCGTCAAGGGTTGGGCACTGGTTAGCAGTTCCAGATCCTTTTACTTCCATGTATGTCTTGCT
CTGGATTTCATCATAGGTCAGCCTCTTTGGGACTCCTTCAGCACTTGCTCCCTAAAATATGAAAAGAAAAGAAATAAAAATATCATACCTGGGTTCGGAT
TTAATCCTCAATGTAACATTGAAACCTTAAATATAAATCTGC