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Detailed information on CNT30378380


BLAST search results

BLAST vs Swiss-Prot:
sp|P23321|PSBO1_ARATH, E-value = 2e-63

BLAST vs NONCODE:
NONBRAT003826, E-value = 3e-103

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535986Arabidopsis thalianaEucalyptus grandis20.4913.886.14101forward
CNT30515361Arabidopsis thalianaJuglans regia40.1644.883.33198forward
CNT30700663Arabidopsis thalianaQuercus lobata24.7523.0283.61122forward
CNT30277684Arabidopsis thalianaChenopodium quinoa48.2826.5683.19238forward
CNT30708164Arabidopsis thalianaGlycine max50.9119.778.09251forward
CNT3091587Arabidopsis thalianaSolanum tuberosum51.9369.3880.47256forward
CNT30181115Arabidopsis thalianaSecale cereale20.897.7786.41103forward
CNT30386162Arabidopsis thalianaTriticum turgidum20.8910.3486.41103forward
CNT30565923Arabidopsis thalianaActinidia chinensis50.112.1678.54247forward
CNT30543261Arabidopsis thalianaBrassica napus46.8642.8690.91231forward
CNT30237252Arabidopsis thalianaBrassica oleracea47.4632.192.31234forward
CNT30147240Arabidopsis thalianaMedicago truncatula50.166.9478.95247forward
CNT30436551Arabidopsis thalianaAegilops tauschii20.8910.8986.41103forward
CNT30658229Arabidopsis thalianaTriticum dicoccoides20.899.3586.41103forward
CNT30264716Arabidopsis thalianaBrassica rapa34.699.5192.98171forward
CNT30597992Arabidopsis thalianaFraxinus excelsior22.1131.2384.4109forward
CNT3010855Arabidopsis thalianaZea mays21.118.5482.69104forward
CNT30207216Arabidopsis thalianaHelianthus annuus22.3120.1881.82110forward
CNT30626592Arabidopsis thalianaDaucus carota50.128.0482.19247forward
CNT30681552Arabidopsis thalianaTriticum urartu20.8911.6186.41103forward
CNT30342715Arabidopsis thalianaEragrostis tef23.7313.0184.62117forward
CNT30368766Arabidopsis thalianaSorghum bicolor23.7312.7383.76117forward
CNT30355236Arabidopsis thalianaLactuca sativa48.4827.9979.92239forward
CNT30408540Arabidopsis thalianaPapaver somniferum23.5327.2385.34116forward
CNT30571093Arabidopsis thalianaVitis vinifera21.325.1282.86105forward
CNT30704474Arabidopsis thalianaPrunus avium21.9114.5486.11108forward
CNT3023343Arabidopsis thalianaPopulus trichocarpa47.6731.6779.57235forward
CNT30121175Arabidopsis thalianaCitrus clementina21.122.8181.73104forward
CNT30497590Arabidopsis thalianaDigitaria exilis23.7313.384.62117forward
CNT3051042Arabidopsis thalianaCucumis sativus45.2340.9279.37223forward

Expression of CNT30378380

Peptides detected in this lncRNA

>peptide 1 (91 aa)
MCILYKRDKRRKHQKMLSLSSNTINGKYNNMITQVDHTTPLGSSRSPLQAPPRLLCLQLAMPRRCHILWIHHGPLGPRRKSHGTMEPRIFR*

>peptide 2 (29 aa)
DRKVKIGTVFTMKDMDIQKIQDLRHVHFI*

Sequence

>CNT30378380
GACCGTAAGGTTAAAATCGGTACTGTTTTTACGATGAAGGACATGGATATACAGAAAATTCAAGATCTTAGGCATGTGCATTTTATATAAGAGAGATAAA
CGAAGAAAGCATCAAAAGATGTTATCATTATCATCAAACACAATCAACGGAAAATATAATAACATGATCACTCAAGTTGACCATACCACACCCCTTGGAT
CTTCACGTTCTCCTTTACAAGCTCCTCCTCGTCTCCTCTGCCTCCAGCTGGCAATGCCACGGCGTTGTCATATCCTGTGGATCCACCACGGCCCTTTGGG
TCCAAGAAGGAAGAGCCACGGTACGATGGAACCAAGAATTTTCCGGTGAAGCTGTCTGGTTTGCCTGAGGCGTCAAGCTGTTTGACTGTGAAAAGGAATG
GCACACGTTCACCTCCTGGAAGTTGGACTGTGACTGCAGCATAGTCGATTCCATCTTCTTCCTTGAAATTGACGCTTCCGTCTGAAGCAACCT