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Detailed information on CNT30264716


BLAST search results

BLAST vs Swiss-Prot:
sp|P84989|PSBO_POPEU, E-value = 7e-18

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30515361Brassica rapaJuglans regia16.4166.7478.98295forward
CNT30378380Brassica rapaArabidopsis thaliana9.5134.6992.98171forward
CNT30277668Brassica rapaChenopodium quinoa23.0854.1878.55415forward
CNT30727931Brassica rapaCorchorus capsularis12.1228.1383.49218forward
CNT30710612Brassica rapaGlycine max15.0226.1681.85270forward
CNT3042430Brassica rapaPrunus dulcis15.0724.8982.66271forward
CNT30567885Brassica rapaActinidia chinensis15.6324.278.65281forward
CNT30541282Brassica rapaBrassica napus32.3770.1298.97582forward
CNT30508746Brassica rapaSolanum lycopersicum11.7925.680.19212forward
CNT30436215Brassica rapaAegilops tauschii13.6843.0879.67246forward
CNT30597992Brassica rapaFraxinus excelsior4.5123.2187.6581forward
CNT30607994Brassica rapaGossypium raimondii14.2429.4983.98256forward
CNT30713316Brassica rapaMalus domestica golden11.4622.183.98206forward
CNT30626592Brassica rapaDaucus carota13.1326.7983.05236forward
CNT30477612Brassica rapaArabidopsis halleri13.5248.892.18243forward
CNT30704492Brassica rapaPrunus avium12.1823.3284.02219forward
CNT3023343Brassica rapaPopulus trichocarpa14.0233.9682.54252forward
CNT30557822Brassica rapaPanicum hallii13.6835.2480.08246forward
CNT30724288Brassica rapaLupinus angustifolius14.9623.4780.3269forward
CNT3051042Brassica rapaCucumis sativus6.1220.1884.55110forward

Expression of CNT30264716

Peptides detected in this lncRNA

>peptide 1 (83 aa)
MCNFYKREKHRKHQKMFSLSSNTINRRCFDIDNMIITQVDHTTPLGSSHPLVPWHPSQYPRAEDSQTLQSLLLSQVCSWSLSE*

>peptide 2 (36 aa)
MILTHACRIYCKSILETFLVTECKDLYYTLLRIRPL*

>peptide 3 (51 aa)
MSRDLRPSTDTICFVYKLNSVLFSIHNPMHIKYRVRSIRSKLIRLNYLQKL*

>peptide 4 (51 aa)
MMHVFVAILICLYYCLILRFVVLVYWWWIIRKMELNILQNKMILDIEHVIR*

>peptide 5 (29 aa)
MCCPTLMQLSVFFHVTGSKTKHRHNMFCL*

>peptide 6 (31 aa)
MQRRCHILWIHHGPLGPRRTSHGTKGLRICQ*

>peptide 7 (70 aa)
MSLVFWKSGGAFLLTLSALTVKEVGSKQNFLPAYFPGLKEKVSEPPSMVGHWLAVPVPFTSMYVLLCISS*

Sequence

>CNT30264716
CTGATGTGTATGTTTCCTACGTCCCAATAGTCACTTTATTTGAATGATAAACTAATGGTTTGCAGATCTACTGGATACTGATCTGATCTCCCACGGTGGT
GACAGTCATATGCAAGGCCAACAATAGTTATTACATGAGGTGAAATTGGACAACAATACAGTTTTGCTTACGTAGTTCCATTTTTCAGCATGATGCATGT
TTTTGTCGCGATTTTAATTTGTCTTTATTACTGCCTTATTCTTAGGTTTGTAGTTTTAGTGTATTGGTGGTGGATTATCCGTAAGATGGAACTTAACATT
CTTCAAAACAAAATGATCTTGGATATAGAACATGTGATTAGATGATATTAACACACGCTTGTAGAATCTACTGTAAGAGTATCTTGGAAACTTTTTTGGT
TACTGAATGCAAAGACTTGTACTATACTTTGCTACGAATCCGACCTCTCTAGCTAGGATTTAAAATATAATTATGTCCCCGAGAAAATTAATCAAATCTT
ATTAATTATATACTAACTCCAGAGGTTTTAAACTTAAGAGAGAATCTGTCTGTGACCTGCATTGTTATGTGCTGTCCCACGCTAATGCAATTGTCTGTGT
TCTTTCATGTCACGGGATCTAAGACCAAGCACAGACACAATATGTTTTGTTTATAAGTTAAACAGTGTTTTGTTTAGTATTCACAACCCCATGCACATTA
AATACAGGGTAAGGTCCATAAGGAGCAAGCTGATTAGACTAAATTACTTACAGAAATTATGAAAATACTATTTCCACTTGCTACTCGCCAGTCTATTCTA
ACTAATTTCATTTAAATATACCACAAGCCTACCGTACAAACCAGCTAATTCAATCATTTGTATATTCACTAATTATCAACGTTATTTTATTGTTAACTTC
TAGTTTTAAGTTAACTAAATTGGAAACGAACCGAATATTTAATCCAAATTATTTACAAAAAGCCAGTTTGCAAACATCTTAGTTCATTGTAGCCACCGGT
TAATTAGGCTAAACATGTACATAGCTCATAAGCTCATAGCTCAAAGTTGATAGTTTGAAACCACACATTTTGTTATAAGGAGGAATGTGCAATTTTTATA
AGAGAGAAAAACATAGAAAGCATCAAAAGATGTTCTCATTATCATCGAATACAATTAACAGAAGATGTTTTGATATAGATAACATGATCATCACTCAAGT
TGACCATACCACACCCCTTGGATCTTCACATCCTTTGGTACCTTGGCACCCAAGTCAGTATCCGAGGGCTGAAGACTCTCAAACACTCCAATCACTTCTC
CTGTCTCAGGTTTGCTCTTGGTCACTTTCAGAGTGATCTCACCCACCGAAGCTGCCGTGTTCTTCACGTTTTCCTTCGAAAGCTCCTCTTCGTCTCCTCT
GCCTCCAGCTGGCAATGCAACGGCGTTGTCATATCCTGTGGATCCACCACGGCCCTTTGGGTCCAAGAAGGACGAGCCACGGTACGAAGGGACTAAGAAT
TTGCCAGTGAAGCTGTCTGGTTTGCCTGAGGGTGTAGGTGAGACGGGTCATGAGCTTGGTGTTCTGGAAGTCAGGAGGTGCGTTCTTGCTAACACTCTCA
GCCTTGACGGTGAAGGAAGTAGGCTCGAAGCAGAACTTCTTGCCGGCGTACTTTCCCGGTTTGAAGGAGAAAGTCTCAGAGCCACCGTCAATGGTTGGGC
ACTGGTTGGCAGTTCCAGTTCCCTTCACTTCCATGTATGTCTTGCTTTGTATCTCATCGTAAGTCAGTCTCTTCGGAGCTCCTTCTGCACTTGCTCCC