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Detailed information on CNT30535986


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40459|PSBO_TOBAC, E-value = 5e-146

BLAST vs NONCODE:
NONTCAT000011, E-value = 6e-53

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674885Eucalyptus grandisSetaria viridis17.2135.3984.92126forward
CNT30317789Eucalyptus grandisCorylus avellana17.4963.0585.16128forward
CNT30547255Eucalyptus grandisIpomoea triloba21.313086.54156forward
CNT30515361Eucalyptus grandisJuglans regia54.9290.9581.84402forward
CNT30700663Eucalyptus grandisQuercus lobata19.5426.9886.01143forward
CNT30378380Eucalyptus grandisArabidopsis thaliana13.820.4986.14101forward
CNT30277684Eucalyptus grandisChenopodium quinoa66.2654.1380.62485forward
CNT30727933Eucalyptus grandisCorchorus capsularis41.2620.282.12302forward
CNT30379569Eucalyptus grandisManihot esculenta41.834.7380.72306forward
CNT30525147Eucalyptus grandisPhaseolus vulgaris60.5272.3981.26443forward
CNT30196966Eucalyptus grandisPisum sativum8.22586.6760forward
CNT30708164Eucalyptus grandisGlycine max67.3538.780.53493forward
CNT3042430Eucalyptus grandisPrunus dulcis38.9326.1780285forward
CNT3091587Eucalyptus grandisSolanum tuberosum41.6782.6680.66305forward
CNT30181115Eucalyptus grandisSecale cereale67.937.4883.5497forward
CNT30290560Eucalyptus grandisTriticum aestivum60.3843.584.62442forward
CNT30221070Eucalyptus grandisHordeum vulgare19.9562.9388.36146forward
CNT30385398Eucalyptus grandisTriticum turgidum87.1658.7582.92638forward
CNT30567883Eucalyptus grandisActinidia chinensis67.7623.0280.65496forward
CNT30592119Eucalyptus grandisMusa acuminata91.6774.3184.5671forward
CNT3086209Eucalyptus grandisVigna radiata29.114.9684.51213forward
CNT30543261Eucalyptus grandisBrassica napus14.8920.2288.07109forward
CNT30237252Eucalyptus grandisBrassica oleracea53.2853.578.46390forward
CNT30508746Eucalyptus grandisSolanum lycopersicum38.1133.779.93279forward
CNT30147296Eucalyptus grandisMedicago truncatula24.8631.8783.52182forward
CNT30436686Eucalyptus grandisAegilops tauschii67.946.1983.7497forward
CNT30244672Eucalyptus grandisAvena sativa61.260.383.71448forward
CNT30658638Eucalyptus grandisTriticum dicoccoides67.940.0883.7497forward
CNT30263014Eucalyptus grandisBrassica rapa38.2531.4680280forward
CNT30614251Eucalyptus grandisArabis alpina16.5342.6183.47121forward
CNT30597992Eucalyptus grandisFraxinus excelsior28.2859.3185.02207forward
CNT3010855Eucalyptus grandisZea mays51.3767.0282.18376forward
CNT30607994Eucalyptus grandisGossypium raimondii39.2133.0680.14287forward
CNT30718209Eucalyptus grandisMalus domestica golden43.9923.9280.43322forward
CNT30626592Eucalyptus grandisDaucus carota41.6734.6280305forward
CNT30680731Eucalyptus grandisTriticum urartu87.1656.7182.76638forward
CNT30342715Eucalyptus grandisEragrostis tef67.955.2883.9497forward
CNT30477612Eucalyptus grandisArabidopsis halleri14.8921.8985.32109forward
CNT30368483Eucalyptus grandisSorghum bicolor67.7640.9282.46496forward
CNT30357143Eucalyptus grandisLactuca sativa41.3942.0279.87303forward
CNT30408540Eucalyptus grandisPapaver somniferum12.1620.8984.2789forward
CNT30571093Eucalyptus grandisVitis vinifera20.7736.3682.89152forward
CNT30704492Eucalyptus grandisPrunus avium21.9917.1582.61161forward
CNT3023343Eucalyptus grandisPopulus trichocarpa47.8147.1778.86350forward
CNT30319471Eucalyptus grandisAsparagus officinalis10.1124.8387.8474forward
CNT30121175Eucalyptus grandisCitrus clementina45.6373.2580.24334forward
CNT30583974Eucalyptus grandisEchinochloa crusgalli90.367.1182.75661forward
CNT30497590Eucalyptus grandisDigitaria exilis44.9537.3981.76329forward
CNT30557665Eucalyptus grandisPanicum hallii17.2122.6286.51126forward
CNT30724033Eucalyptus grandisLupinus angustifolius52.4634.1983.33384forward
CNT3051042Eucalyptus grandisCucumis sativus31.4242.279.13230forward

Expression of CNT30535986

Peptides detected in this lncRNA

>peptide 1 (79 aa)
MFSLVKSSSSPLPPAGKATALSYPVEPPRPFGSRNDEPRYEGTRNSPLKLSGFPEATSCLMVKRKGTRSPPGSCTVTAA*

Sequence

>CNT30535986
AATAGACACATTCATTCGTCGAATTCGTTCATTCAAAAGATAAACAATTAAAAGCCCCTCTACGACTCGAGCTGAGCATACCAGACACCCTGGATCTTCA
CATCCTTAGGCACCTTAGCTCCCAAATCAGTATCCGATGGCTGGACGCTCTCAAACACACCGATCACCTCTCCGGTCTCGGGCTTGGTCTTGGTCACGCT
CAGCGTGATCTTCCCGGTCGATGACGAGGCGTTCTTGATGTTCTCCTTGGTCAAGTCCTCCTCGTCTCCTCTCCCTCCGGCAGGCAAGGCCACAGCATTG
TCGTACCCGGTGGAACCACCACGGCCCTTTGGGTCGAGGAATGACGAGCCACGGTATGAGGGCACGAGGAACTCCCCGCTGAAGCTCTCGGGCTTCCCTG
AGGCCACGAGCTGCTTGATGGTGAAGAGGAAGGGCACGCGCTCACCCCCAGGGAGCTGCACAGTGACGGCCGCGTAGTCGATCCCATCCTTCTCCTCGAA
TTTGACAGTGCCATCAGGGGAGACCTCAAAGGGGCCCTCGATCTCGTCGAGGGTGTAGGTCGGCTCGAGGCAGATTTTCTTGGCATTGTACTTGCCAGGC
TTGAAGGCGAACGAGTCGAGCCCACCGTCAATGGTGGGGCACTGGTTGGCCGTGCCTGTCCCCTTGACTTCCATGTAGGTCTTGCTCTGGATCTCGTCAT
AAGTCAGTCTCTTCGGGGCTCCCTCCGCACCG