« Back to Arabidopsis halleri search


Detailed information on CNT30477612


BLAST search results

BLAST vs Swiss-Prot:
sp|P23321|PSBO1_ARATH, E-value = 6e-52

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674885Arabidopsis halleriSetaria viridis15.4621.6387.0177forward
CNT30535986Arabidopsis halleriEucalyptus grandis21.8914.8985.32109forward
CNT30317789Arabidopsis halleriCorylus avellana40.1698.5281.5200forward
CNT30515312Arabidopsis halleriJuglans regia22.497.1684.82112forward
CNT30374900Arabidopsis halleriArabidopsis thaliana44.3837.9185.97221forward
CNT30727931Arabidopsis halleriCorchorus capsularis49.231.6180.82245forward
CNT30379609Arabidopsis halleriManihot esculenta16.8722.4686.984forward
CNT30710612Arabidopsis halleriGlycine max23.6911.4387.29118forward
CNT3042430Arabidopsis halleriPrunus dulcis4922.4182.38244forward
CNT30290508Arabidopsis halleriTriticum aestivum34.7422.5879.77173forward
CNT30386162Arabidopsis halleriTriticum turgidum34.7417.3779.77173forward
CNT30567884Arabidopsis halleriActinidia chinensis23.695.9987.29118forward
CNT30592119Arabidopsis halleriMusa acuminata20.4811.383.33102forward
CNT3086209Arabidopsis halleriVigna radiata23.698.2982.2118forward
CNT30543700Arabidopsis halleriBrassica napus47.3920.1292.8236forward
CNT30234321Arabidopsis halleriBrassica oleracea47.3917.4992.8236forward
CNT30147114Arabidopsis halleriMedicago truncatula22.496.3283.04112forward
CNT30436022Arabidopsis halleriAegilops tauschii34.7417.5379.77173forward
CNT30244672Arabidopsis halleriAvena sativa37.1524.981.08185forward
CNT30657716Arabidopsis halleriTriticum dicoccoides34.7417.8979.77173forward
CNT30264716Arabidopsis halleriBrassica rapa48.813.5292.18243forward
CNT30612619Arabidopsis halleriArabis alpina29.3238.5286.99146forward
CNT30597992Arabidopsis halleriFraxinus excelsior16.8724.0785.7184forward
CNT3010265Arabidopsis halleriZea mays43.9830.3779.91219forward
CNT30607994Arabidopsis halleriGossypium raimondii49.228.2382.45245forward
CNT30718209Arabidopsis halleriMalus domestica golden35.7413.2282.02178forward
CNT30626592Arabidopsis halleriDaucus carota31.7317.9384.18158forward
CNT30680592Arabidopsis halleriTriticum urartu34.7419.2779.77173forward
CNT30342712Arabidopsis halleriEragrostis tef42.1724.1479.52210forward
CNT30357144Arabidopsis halleriLactuca sativa23.0912.285.22115forward
CNT30704474Arabidopsis halleriPrunus avium40.7627.3282.27203forward
CNT3023343Arabidopsis halleriPopulus trichocarpa48.3932.4883.82241forward
CNT30584089Arabidopsis halleriEchinochloa crusgalli43.9818.5381.74219forward
CNT30557822Arabidopsis halleriPanicum hallii43.9831.3880.37219forward
CNT30724089Arabidopsis halleriLupinus angustifolius23.2928.2283.62116forward
CNT30115348Arabidopsis halleriEutrema salsugineum39.9629.5386.43199forward

Expression of CNT30477612

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MSCSESHRRSVSLELPLHLLPFITRETNNSKSVDPIRLNQR*

>peptide 2 (64 aa)
LVFWNSGGAFLLTLSALTVKEVGSKQNFLPAYFPGLNENVSEPPSIVGHWLAVPVPFTSMYVLL*

>peptide 3 (95 aa)
GVLELRRRVLAYTVCLDGEGSRLEAELLACVLSGLERECLRATVNSWALVSRSSSFHFHVCLALNLIVGQSLWSSLCTCSLSLHEKQTTLNQLIQ*

Sequence

>CNT30477612
TTGGTGTTCTGGAACTCAGGAGGCGCGTTCTTGCTTACACTGTCTGCCTTGACGGTGAAGGAAGTAGGCTCGAAGCAGAACTTCTTGCCTGCGTACTTTC
CGGGCTTGAACGAGAATGTCTCAGAGCCACCGTCAATAGTTGGGCACTGGTTAGCCGTTCCAGTTCCTTTCACTTCCATGTATGTCTTGCTCTGAATCTC
ATCGTAGGTCAGTCTCTTTGGAGCTCCCTCTGCACTTGCTCCCTTTCATTACACGAGAAACAAACAACTCTAAATCAGTTGATCCAATAAGATTGAATCA
ACGATAACAAGAACTGGAATAGTGCTAATCCGTATCTGTTATTGGTTTAGTTGTTCTGTTCTCAGTTTAATATAAAACTCATGTGATGACTTCGAAAGAT
AGTAATGCAAATTAACGCACACACAAAAAGACTTCTTCTCAGTTACTCAATTAATCTTATGTTTATTGATTAATCTATAGTTTGGTAATGAAATCAGT