CANTATAdb - search

Detailed information on CNT3042430

BLAST search results

BLAST vs Swiss-Prot:
sp|Q40459|PSBO_TOBAC, E-value = 4e-108

BLAST vs NONCODE:
NONTCAT000011, E-value = 5e-76

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30674637	Prunus dulcis	Setaria viridis	11.48	56.56	84	125	forward
CNT30535986	Prunus dulcis	Eucalyptus grandis	26.17	38.93	80	285	forward
CNT30317789	Prunus dulcis	Corylus avellana	18.46	99.01	86.57	201	forward
CNT30546556	Prunus dulcis	Ipomoea triloba	23.14	21.09	82.94	252	forward
CNT30515361	Prunus dulcis	Juglans regia	25.9	63.8	83.69	282	forward
CNT30700663	Prunus dulcis	Quercus lobata	14.23	29.25	87.1	155	forward
CNT30374900	Prunus dulcis	Arabidopsis thaliana	12.86	24.01	86.43	140	forward
CNT30277684	Prunus dulcis	Chenopodium quinoa	30.58	37.17	83.48	333	forward
CNT30727932	Prunus dulcis	Corchorus capsularis	32.05	26.76	86.25	349	forward
CNT30379731	Prunus dulcis	Manihot esculenta	29.38	28.83	83.44	320	forward
CNT30524993	Prunus dulcis	Phaseolus vulgaris	28.28	26.85	82.79	308	forward
CNT30710612	Prunus dulcis	Glycine max	32.97	34.79	81.62	359	forward
CNT3091587	Prunus dulcis	Solanum tuberosum	9.92	29.27	85.19	108	forward
CNT30180413	Prunus dulcis	Secale cereale	15.89	20.02	80.92	173	forward
CNT30290508	Prunus dulcis	Triticum aestivum	15.89	22.58	81.5	173	forward
CNT30385696	Prunus dulcis	Triticum turgidum	13.68	36.79	79.87	149	forward
CNT30567884	Prunus dulcis	Actinidia chinensis	33.15	18.32	82.55	361	forward
CNT3086209	Prunus dulcis	Vigna radiata	31.86	24.37	81.56	347	forward
CNT30543261	Prunus dulcis	Brassica napus	27	54.55	81.29	294	forward
CNT30238377	Prunus dulcis	Brassica oleracea	23.32	47.3	82.68	254	forward
CNT30508746	Prunus dulcis	Solanum lycopersicum	30.49	40.1	84.04	332	forward
CNT30147114	Prunus dulcis	Medicago truncatula	33.7	20.7	80.38	367	forward
CNT30436215	Prunus dulcis	Aegilops tauschii	15.89	30.3	81.5	173	forward
CNT30244672	Prunus dulcis	Avena sativa	15.61	22.88	81.18	170	forward
CNT30658659	Prunus dulcis	Triticum dicoccoides	15.89	20.77	81.5	173	forward
CNT30264716	Prunus dulcis	Brassica rapa	24.89	15.07	82.66	271	forward
CNT30612619	Prunus dulcis	Arabis alpina	11.2	32.19	84.43	122	forward
CNT30597992	Prunus dulcis	Fraxinus excelsior	12.76	39.83	83.45	139	forward
CNT30607994	Prunus dulcis	Gossypium raimondii	23.51	29.49	85.16	256	forward
CNT30207216	Prunus dulcis	Helianthus annuus	14.05	28.07	81.05	153	forward
CNT30718209	Prunus dulcis	Malus domestica golden	27.92	22.59	91.78	304	forward
CNT30626592	Prunus dulcis	Daucus carota	29.94	37	83.44	326	forward
CNT30681647	Prunus dulcis	Triticum urartu	7.9	22.93	84.88	86	forward
CNT30342712	Prunus dulcis	Eragrostis tef	21.67	27.13	80.51	236	forward
CNT30477612	Prunus dulcis	Arabidopsis halleri	22.41	49	82.38	244	forward
CNT30621504	Prunus dulcis	Cajanus cajan	23.32	16.12	82.68	254	forward
CNT30355286	Prunus dulcis	Lactuca sativa	21.21	38.06	80.52	231	forward
CNT30408540	Prunus dulcis	Papaver somniferum	8.72	22.3	87.37	95	forward
CNT30571041	Prunus dulcis	Vitis vinifera	13.96	41.87	83.55	152	forward
CNT30704492	Prunus dulcis	Prunus avium	30.3	35.14	98.18	330	forward
CNT3023343	Prunus dulcis	Populus trichocarpa	20.84	30.59	86.34	227	forward
CNT30319324	Prunus dulcis	Asparagus officinalis	11.48	39.18	81.6	125	forward
CNT30121175	Prunus dulcis	Citrus clementina	26.54	63.38	84.08	289	forward
CNT3036059	Prunus dulcis	Cucumis melo	30.3	53.92	81.21	330	forward
CNT30584089	Prunus dulcis	Echinochloa crusgalli	23.6	21.74	79.77	257	forward
CNT30557734	Prunus dulcis	Panicum hallii	23.6	36.51	80.93	257	forward
CNT30724288	Prunus dulcis	Lupinus angustifolius	33.43	31.76	83.79	364	forward
CNT3051042	Prunus dulcis	Cucumis sativus	17.54	35.05	82.72	191	forward
CNT30115348	Prunus dulcis	Eutrema salsugineum	13.96	22.55	80.92	152	forward

Expression of CNT3042430

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MSCSGFHQRSASLELPLHLLPGNTSGGQQ*

>peptide 2 (36 aa)
MLDCDCSIVNPIFLLKLESAIWGHFERPFDLIEGVG*

>peptide 3 (29 aa)
IRWLDALKHSNQLSTLRLALGHTQCDLPF*

>peptide 4 (48 aa)
MVGHWFAVPVPFTSKYVLLWISSKVSLFGTPSAPAPWKHKWWPTMIKC*

>peptide 5 (43 aa)
MQWHCHNQWSLLYPLGPRKKNRGTMVLETPLQSFRVCLRLQAV*

>peptide 6 (57 aa)
SDGWMLSNTPINSPLSGLLLVTLSVIFPFDEAVFLMFSLANSSSSPLPPAGNAMALS*

Sequence

>CNT3042430
ATCAGATGGCTGGATGCTCTCAAACACTCCAATCAACTCTCCACTCTCAGGCTTGCTCTTGGTCACACTCAGTGTGATCTTCCCTTTTGATGAAGCAGTA
TTCTTGATGTTCTCCTTGGCCAACTCCTCCTCATCTCCTCTGCCTCCTGCTGGCAATGCAATGGCATTGTCATAACCAGTGGAGCCTCCTCTACCCTTTG
GGTCCAAGAAAGAAGAACCGCGGTACGATGGTACTAGAAACTCCCCTCCAAAGTTTTCGGGTTTGCCTGAGGCTACAAGCTGTTTGATGCTGGACTGTGA
CTGCAGCATAGTCAATCCCATCTTTCTCCTCAAACTTGAGAGTGCCATCTGGGGACACTTCGAAAGGCCCTTCGATCTCATCGAGGGTGTAGGTTAGGCG
GGTCATCAGCTTGGTGTTTTGGAACTCTGGTGGAGCATTCTTGTTCACACTCTCTGCCTTGACAGTGAAGGATGTGGGCTCTAGGCAGAACTTCTTGGCA
GTGTACTTGCCCGGCTTGAAGGCGAAGGCTTCTAACCCTCCATCGATGGTTGGGCATTGGTTTGCAGTTCCTGTTCCCTTCACTTCCAAGTATGTCTTGC
TCTGGATTTCATCAAAGGTCAGCCTCTTTGGAACTCCCTCTGCACCTGCTCCCTGGAAACACAAGTGGTGGCCAACAATGATAAAATGTTAATCACCATT
CATCACCACCAGAATTGAAATGAAATCTAACAACTACAGTTACATTATGTTGTCAGACTGTGATCTAAATTGTTTATGTGAGATCCATCGCGCACAACGA
TAGAAAATCCAATGATTATGTTATCAAATTGTAAATCTAAACTCATCATATCAGACATTCAGAGTGTCATTCTAGCAACATAACTTGTCAAATATCTAGC
ATGCCACAGAGAACATCAGAAACCTTTGCATATACAACAGGTACCACAAACTAATCTATATCCCTCTAAACCATAGAAAGTTCATACCCTATACACATAC
ATAATAAAGATAATAAAATTCATCATTGTTCTTCTTTTATACGCTTCTAAGCACATGAAGTAAGAAACCAATCAAGCAGTGAAATGGAA