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Detailed information on CNT30700663


BLAST search results

BLAST vs Swiss-Prot:
sp|P23322|PSBO_SOLLC, E-value = 2e-88

BLAST vs NONCODE:
NONTCAT000011, E-value = 2e-95

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674885Quercus lobataSetaria viridis23.7735.3981.75126forward
CNT30535986Quercus lobataEucalyptus grandis26.9819.5486.01143forward
CNT30317789Quercus lobataCorylus avellana29.2576.3593.55155forward
CNT30547255Quercus lobataIpomoea triloba32.0832.6982.35170forward
CNT30515312Quercus lobataJuglans regia83.5828.3283.3443forward
CNT30378380Quercus lobataArabidopsis thaliana23.0224.7583.61122forward
CNT30277684Quercus lobataChenopodium quinoa61.5136.3883.44326forward
CNT30727933Quercus lobataCorchorus capsularis64.1522.7488.53340forward
CNT30379569Quercus lobataManihot esculenta64.3438.7185.92341forward
CNT30525147Quercus lobataPhaseolus vulgaris59.8151.883.91317forward
CNT30711968Quercus lobataGlycine max66.2348.6186.04351forward
CNT3042430Quercus lobataPrunus dulcis29.2514.2387.1155forward
CNT3091587Quercus lobataSolanum tuberosum64.3492.4181.52341forward
CNT30288231Quercus lobataTriticum aestivum16.9840.3684.4490forward
CNT30221247Quercus lobataHordeum vulgare21.5121.3983.33114forward
CNT30385696Quercus lobataTriticum turgidum19.2525.1984.31102forward
CNT30567886Quercus lobataActinidia chinensis71.3225.9484.66378forward
CNT30592119Quercus lobataMusa acuminata27.5516.1783.56146forward
CNT3086112Quercus lobataVigna radiata51.3244.1683.09272forward
CNT30542247Quercus lobataBrassica napus21.8919.4683.62116forward
CNT30237252Quercus lobataBrassica oleracea21.8915.9183.62116forward
CNT30508746Quercus lobataSolanum lycopersicum58.337.3282.2309forward
CNT30147296Quercus lobataMedicago truncatula64.1559.5486.18340forward
CNT30242448Quercus lobataAvena sativa32.2632.0880.7171forward
CNT30263014Quercus lobataBrassica rapa21.8913.0383.62116forward
CNT30597992Quercus lobataFraxinus excelsior33.7751.2986.03179forward
CNT3010265Quercus lobataZea mays23.7717.4881.75126forward
CNT30607994Quercus lobataGossypium raimondii23.5814.491.2125forward
CNT30207216Quercus lobataHelianthus annuus67.7465.8779.39359forward
CNT30718209Quercus lobataMalus domestica golden63.7725.1181.95338forward
CNT30626592Quercus lobataDaucus carota63.7738.3781.66338forward
CNT30681647Quercus lobataTriticum urartu17.7425.0784.0494forward
CNT30342705Quercus lobataEragrostis tef19.6221.8583.65104forward
CNT30621504Quercus lobataCajanus cajan28.689.6485.53152forward
CNT30356664Quercus lobataLactuca sativa60.5763.5681.93321forward
CNT30408540Quercus lobataPapaver somniferum66.0482.1678.29350forward
CNT30571041Quercus lobataVitis vinifera33.5849.0487.08178forward
CNT30704474Quercus lobataPrunus avium24.7217.6389.31131forward
CNT3023343Quercus lobataPopulus trichocarpa51.8937.0688.73275forward
CNT30121175Quercus lobataCitrus clementina41.3248.0384.47219forward
CNT3036059Quercus lobataCucumis melo32.6428.2782.66173forward
CNT30584089Quercus lobataEchinochloa crusgalli23.7710.6682.54126forward
CNT30557822Quercus lobataPanicum hallii23.7718.0583.33126forward
CNT30724288Quercus lobataLupinus angustifolius65.4730.2886.46347forward
CNT3051042Quercus lobataCucumis sativus64.3462.5782.7341forward

Expression of CNT30700663

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MSQPRHQWLGTGWLFRFPLLPCMSCSEFHHRLASLEL

>peptide 2 (53 aa)
MMLCFLHSPWQVPPHLLFLQQAMQLHCHNRLSHLFPLGPRKMNHGKMVLEIDH*

Sequence

>CNT30700663
TGATGATGCTGTGTTTTTTACATTCTCCTTGGCAAGTTCCTCCTCATCTCCTCTTCCTCCAGCAGGCAATGCAACTGCATTGTCATAACCGGTTGAGCCA
CCTCTTCCCTTTGGGTCCAAGAAAGATGAACCACGGTAAGATGGTACTAGAAATTGACCACTAAAACCATTTGGTTTGCCTGATGCTACCAATTCCTTAA
TGGTGAAAAGGAATGGCACACGCTCACCACCAGGCAGCTGAACTGTCACTGCGGCGTAGTCGATACCATCTTTCTCCTCGAACTTGACAGTGCCATCAGG
AGAAACTTCAAAGGGTCCCTCAATTTCATCGAGGGTGTAGGTTAAGCGGGTCATGAGCTTGGTGTTTTGGAACTCAGGCAGATCTTCTTGGCATTGTACT
TGCCGGGCTTGACGGCGAATGAGTCAACCCCGCCATCAATGGTTGGGCACTGGTTGGCTGTTCCGGTTCCCTTTACTTCCATGTATGTCTTGCTCTGAAT
TTCATCATAGGTTAGCCTCTTTGGAACTCC