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Detailed information on CNT30508746


BLAST search results

BLAST vs Swiss-Prot:
sp|P23322|PSBO_SOLLC, E-value = 2e-118

BLAST vs NONCODE:
NONGMAT000837, E-value = 4e-45

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535986Solanum lycopersicumEucalyptus grandis33.738.1179.93279forward
CNT30317789Solanum lycopersicumCorylus avellana22.190.1580.33183forward
CNT30546556Solanum lycopersicumIpomoea triloba24.8817.2483.98206forward
CNT30515361Solanum lycopersicumJuglans regia17.0331.984.4141forward
CNT30700663Solanum lycopersicumQuercus lobata37.3258.382.2309forward
CNT30277684Solanum lycopersicumChenopodium quinoa60.8756.2583.53504forward
CNT30727933Solanum lycopersicumCorchorus capsularis54.2330.0383.52449forward
CNT30379731Solanum lycopersicumManihot esculenta60.8745.4183.73504forward
CNT30524939Solanum lycopersicumPhaseolus vulgaris5037.479.95414forward
CNT30711968Solanum lycopersicumGlycine max39.0144.7483.59323forward
CNT3042430Solanum lycopersicumPrunus dulcis40.130.4984.04332forward
CNT3091254Solanum lycopersicumSolanum tuberosum33.5718.498.56278forward
CNT30288970Solanum lycopersicumTriticum aestivum25.2415.3679.9209forward
CNT30386646Solanum lycopersicumTriticum turgidum25.2415.8679.9209forward
CNT30567880Solanum lycopersicumActinidia chinensis60.2721.9181.76499forward
CNT30592113Solanum lycopersicumMusa acuminata24.1527.4779200forward
CNT3086209Solanum lycopersicumVigna radiata51.0929.7182.03423forward
CNT30543261Solanum lycopersicumBrassica napus17.1526.3580.99142forward
CNT30238377Solanum lycopersicumBrassica oleracea27.0541.7179.91224forward
CNT30147114Solanum lycopersicumMedicago truncatula59.6627.8680.77494forward
CNT30244319Solanum lycopersicumAvena sativa25.2423.8978.95209forward
CNT30659249Solanum lycopersicumTriticum dicoccoides25.2420.2379.43209forward
CNT30264716Solanum lycopersicumBrassica rapa25.611.7980.19212forward
CNT30597992Solanum lycopersicumFraxinus excelsior27.4265.0488.11227forward
CNT30607994Solanum lycopersicumGossypium raimondii27.7826.581.74230forward
CNT30207216Solanum lycopersicumHelianthus annuus43.3665.8779.39359forward
CNT30718209Solanum lycopersicumMalus domestica golden33.5720.6584.53278forward
CNT30624222Solanum lycopersicumDaucus carota53.7452.5484.72445forward
CNT30681259Solanum lycopersicumTriticum urartu1820.7280.54149forward
CNT30348021Solanum lycopersicumEragrostis tef15.2245.3280.95126forward
CNT30621504Solanum lycopersicumCajanus cajan27.1714.2878.67225forward
CNT30356640Solanum lycopersicumLactuca sativa48.6760.5181.64403forward
CNT30408540Solanum lycopersicumPapaver somniferum27.4253.2981.06227forward
CNT30571041Solanum lycopersicumVitis vinifera24.5255.9289.16203forward
CNT30704492Solanum lycopersicumPrunus avium45.4140.0483.24376forward
CNT3023343Solanum lycopersicumPopulus trichocarpa26.8129.9283.33222forward
CNT30121175Solanum lycopersicumCitrus clementina20.6537.581.29171forward
CNT3036059Solanum lycopersicumCucumis melo45.1761.1181.28374forward
CNT30724288Solanum lycopersicumLupinus angustifolius60.9944.0780505forward
CNT3051042Solanum lycopersicumCucumis sativus38.0457.879.68315forward

Expression of CNT30508746

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MLSNTPMTSPVSGLLWVTLKAMQQRCHSQ*

>peptide 2 (70 aa)
MSLVFWKSGAEFLLTPSALTVNDVGSRQNFLAVYLPGLKAKLPTPPSMVGHWLAVPVPFTSIYVLLWISS*

>peptide 3 (42 aa)
CIQALEVFITGYQHEILLELDNIQQDSCFSACPNWVTECLTL*

Sequence

>CNT30508746
GGTGTATACAAGCATTAGAAGTGTTTATAACTGGCTACCAGCATGAAATATTACTTGAGCTTGATAATATACAGCAAGATAGTTGTTTCAGTGCTTGTCC
AAATTGGGTCACAGAATGTTTAACCTTGTAACTTACAACAAAATTTAGACCAAGAAATGATACACACATTCTAGAACTCTCCATCATTCAAGTTGGGCAT
ACCAGATACCCTGGATTTTGACATCCTTGGGAACCTTTGCCCCCAGATCAGTATCAGATGGCTGGATGCTCTCAAATACTCCAATGACCTCACCAGTCTC
TGGCTTGCTCTGGGTAACACTCAAGGCAATGCAACAGCGTTGTCATAGCCAGTAGATCCACCTCGTCCCTTTGGGTCAAGGAAGGATGAACCTCTGTATG
ATGGCACAAGGAACTCACCACTAAAGCTTTCTGGCTTGCCGCTTGCCACAAGCTGTTTGATAGTGAAGAGGAAGGGCACACGCTCACCACCAGGAAGCTG
AACTGTAACAGCAGCATAATCAATTCCATCCTTCTCCTCAAACTTAACAGTGCCATCCGGAGACACTTCAAATGGTCCCTCAATCTCATCAAGAGTGTAG
GTTAAGCGTGTCATGAGCTTGGTTTTTTGGAAGTCTGGGGCTGAGTTCTTGCTGACACCCTCTGCCTTGACTGTGAATGATGTGGGCTCTAGGCAGAATT
TCTTGGCAGTGTATTTGCCTGGTTTGAAGGCAAAGCTGCCAACACCTCCTTCAATGGTAGGACATTGGTTAGCAGTTCCAGTTCCCTTTACTTCCATATA
TGTCTTACTTTGGATTTCATCATAGGTT