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Detailed information on CNT30408540


BLAST search results

BLAST vs Swiss-Prot:
sp|P84989|PSBO_POPEU, E-value = 6e-21

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535986Papaver somniferumEucalyptus grandis20.8912.1684.2789forward
CNT30547255Papaver somniferumIpomoea triloba29.3424.0481.6125forward
CNT30515361Papaver somniferumJuglans regia27.2326.2482.76116forward
CNT30700663Papaver somniferumQuercus lobata82.1666.0478.29350forward
CNT30378380Papaver somniferumArabidopsis thaliana27.2323.5385.34116forward
CNT30277684Papaver somniferumChenopodium quinoa77.9337.0578.92332forward
CNT30727933Papaver somniferumCorchorus capsularis75.5921.5481.37322forward
CNT30379569Papaver somniferumManihot esculenta76.533780.67326forward
CNT30524993Papaver somniferumPhaseolus vulgaris36.3813.5182.58155forward
CNT30708164Papaver somniferumGlycine max75.8225.3579.88323forward
CNT3042430Papaver somniferumPrunus dulcis22.38.7287.3795forward
CNT3091587Papaver somniferumSolanum tuberosum79.3491.679.88338forward
CNT30181115Papaver somniferumSecale cereale23.717.6282.18101forward
CNT30565923Papaver somniferumActinidia chinensis51.1710.7380.28218forward
CNT30542247Papaver somniferumBrassica napus26.5318.9684.96113forward
CNT30237252Papaver somniferumBrassica oleracea26.5315.584.96113forward
CNT30508746Papaver somniferumSolanum lycopersicum53.2927.4281.06227forward
CNT30147296Papaver somniferumMedicago truncatula73.7154.9979.94314forward
CNT30244672Papaver somniferumAvena sativa25.1214.482.24107forward
CNT30263014Papaver somniferumBrassica rapa26.5312.784.96113forward
CNT30597992Papaver somniferumFraxinus excelsior43.4353.0180.54185forward
CNT30207216Papaver somniferumHelianthus annuus32.1625.1481.02137forward
CNT30718209Papaver somniferumMalus domestica golden75.1223.7778.75320forward
CNT30626592Papaver somniferumDaucus carota77.2337.3479.94329forward
CNT30356664Papaver somniferumLactuca sativa69.4858.6181.08296forward
CNT30571093Papaver somniferumVitis vinifera20.1920.5784.8886forward
CNT30704492Papaver somniferumPrunus avium39.9118.181.76170forward
CNT3023343Papaver somniferumPopulus trichocarpa58.9233.8380.08251forward
CNT30319471Papaver somniferumAsparagus officinalis16.223.1586.9669forward
CNT30121175Papaver somniferumCitrus clementina24.4122.8182.69104forward
CNT30724033Papaver somniferumLupinus angustifolius25.829.885.45110forward
CNT3051042Papaver somniferumCucumis sativus51.8840.5579.64221forward

Expression of CNT30408540

Peptides detected in this lncRNA

>peptide 1 (30 aa)
PDKAAVFLTFSFWSSSSSPLPPAGKATALS*

>peptide 2 (42 aa)
RQSGCVLNILLLEFLLVSSSTGWQSNSVVVTSGSTSTLWVQE*

Sequence

>CNT30408540
CCAGACAAAGCGGCTGTGTTCTTAACATTCTCCTTCTGGAGTTCCTCCTCGTCTCCTCTTCCACCGGCTGGCAAAGCAACAGCGTTGTCGTAACCAGTGG
ATCCACCTCTACCCTTTGGGTCCAAGAATGAAGAACCTCTGTATGATGGAACCAAGAAAGGTCCTCCAAAACTTTCTGGCTTACCAGAAGCTACAAGTTG
TTTAACAGTGAATAGGAAAGGTACACGTTCACCTCCTGGGAGCTGGACAGTTACAGCAGCGTAATCAATACCGTCTTTCTCCTCAAACTTAACAGTTCCG
TCTGATGAGACCTCGAAAGGACCCTCGATTTCGTCTAGGGTGTAGGTTAAACGGGTCATGAGTTTAGTCTTGCTCTGGATTTCATCGAAAGTTAGCCTTT
TGGGGACACCCTCAGCGCTAGCTCCC