Detailed information on CNT30612619


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30374900Arabis alpinaArabidopsis thaliana53.334.6589.6202forward
CNT30727931Arabis alpinaCorchorus capsularis32.9816.1382.4125forward
CNT30379569Arabis alpinaManihot esculenta29.5512.7185.71112forward
CNT30710612Arabis alpinaGlycine max33.7712.480.47128forward
CNT3042430Arabis alpinaPrunus dulcis32.1911.284.43122forward
CNT30543261Arabis alpinaBrassica napus48.0233.7785.16182forward
CNT30259787Arabis alpinaBrassica rapa86.2859.8981.96327forward
CNT30718209Arabis alpinaMalus domestica golden34.569.7385.5131forward
CNT30477612Arabis alpinaArabidopsis halleri38.5229.3286.99146forward
CNT30704492Arabis alpinaPrunus avium32.9813.3184.8125forward
CNT3023343Arabis alpinaPopulus trichocarpa31.416.0484.03119forward
CNT30115348Arabis alpinaEutrema salsugineum41.6923.4492.41158forward

Expression of CNT30612619

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MPINLYRDDESRGGESETSDFSGIRAFSDEVFEVRVERTSESSR*

>peptide 2 (87 aa)
VSETGHKLSVLEIRWRILAHAICLDGEGSRLEAEFLAGVFTRLERECLRTTVDSRTLIRCSGPLNLHAYKLIPRRREQRWRERNQRF*

Sequence

>CNT30612619
GTAAGTGAGACGGGTCATAAGCTTAGTGTTTTGGAAATCCGGTGGCGCATTCTTGCTCACGCTATCTGCCTTGACGGTGAAGGAAGTAGGCTCGAAGCAG
AATTTCTTGCCGGTGTATTTACCAGGCTTGAACGAGAATGCCTCAGAACCACCGTCGATAGTCGGACACTGATTCGCTGTTCCGGTCCCCTTAACCTCCA
TGCCTATAAACTTATACCGAGACGACGAGAGCAGAGGTGGCGAGAGCGAAACCAGCGATTTTAGCGGCATCAGAGCATTTTCCGACGAAGTCTTTGAAGT
CAGAGTGGAGAGAACAAGTGAGTCTAGCAGGTGAAGAGTCAAGACCAAAGGACTTTCCAACGGTTTGGTTTGATCGGAG